Hb_001817_050

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1817: 47058-47636
Sequence    

Annotation

kegg
ID rcu:RCOM_0993100
description Transcriptional regulator SUPERMAN, putative
nr
ID XP_012092080.1
description PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
swissprot
ID Q38895
description Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1
trembl
ID A0A067JP76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21805 PE=4 SV=1
Gene Ontology
ID GO:0043167
description transcriptional regulator superman-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001817_050 0.0 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
2 Hb_002235_340 0.0030095028 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
3 Hb_000203_130 0.0126636873 - - -
4 Hb_153199_010 0.0160937543 - - -
5 Hb_000103_210 0.0181040635 - - PREDICTED: protein lin-12-like isoform X1 [Populus euphratica]
6 Hb_001322_200 0.0230803513 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007432_040 0.0271878336 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
8 Hb_004032_170 0.0279402658 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
9 Hb_000530_080 0.029758913 - - PREDICTED: serine/threonine-protein kinase D6PKL2-like [Jatropha curcas]
10 Hb_000733_170 0.0330912395 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
11 Hb_001591_020 0.0389203534 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
12 Hb_001892_040 0.0440131059 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
13 Hb_003092_010 0.0544548243 - - hypothetical protein POPTR_0025s00750g [Populus trichocarpa]
14 Hb_005976_030 0.0566532583 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
15 Hb_000258_010 0.0615901552 - - lipid transfer precursor protein [Hevea brasiliensis]
16 Hb_000389_130 0.0656590455 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
17 Hb_060416_010 0.0659871566 - - conserved hypothetical protein [Ricinus communis]
18 Hb_118941_010 0.0669821926 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
19 Hb_000645_040 0.0691039541 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
20 Hb_008493_020 0.0716771194 - - linamarase [Manihot esculenta]

Gene co-expression network

sample Hb_001817_050 Hb_001817_050 Hb_002235_340 Hb_002235_340 Hb_001817_050--Hb_002235_340 Hb_000203_130 Hb_000203_130 Hb_001817_050--Hb_000203_130 Hb_153199_010 Hb_153199_010 Hb_001817_050--Hb_153199_010 Hb_000103_210 Hb_000103_210 Hb_001817_050--Hb_000103_210 Hb_001322_200 Hb_001322_200 Hb_001817_050--Hb_001322_200 Hb_007432_040 Hb_007432_040 Hb_001817_050--Hb_007432_040 Hb_002235_340--Hb_153199_010 Hb_002235_340--Hb_000203_130 Hb_002235_340--Hb_000103_210 Hb_002235_340--Hb_007432_040 Hb_004032_170 Hb_004032_170 Hb_002235_340--Hb_004032_170 Hb_000203_130--Hb_000103_210 Hb_000203_130--Hb_001322_200 Hb_000203_130--Hb_153199_010 Hb_000203_130--Hb_007432_040 Hb_153199_010--Hb_007432_040 Hb_153199_010--Hb_004032_170 Hb_000530_080 Hb_000530_080 Hb_153199_010--Hb_000530_080 Hb_000733_170 Hb_000733_170 Hb_153199_010--Hb_000733_170 Hb_000103_210--Hb_001322_200 Hb_000103_210--Hb_153199_010 Hb_003092_010 Hb_003092_010 Hb_000103_210--Hb_003092_010 Hb_001322_200--Hb_002235_340 Hb_001322_200--Hb_153199_010 Hb_001322_200--Hb_003092_010 Hb_007432_040--Hb_004032_170 Hb_007432_040--Hb_000530_080 Hb_007432_040--Hb_000733_170 Hb_001591_020 Hb_001591_020 Hb_007432_040--Hb_001591_020 Hb_001892_040 Hb_001892_040 Hb_007432_040--Hb_001892_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.034939 2.81128 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis