Hb_001817_070

Information

Type -
Description -
Location Contig1817: 70512-71069
Sequence    

Annotation

kegg
ID rcu:RCOM_0993110
description nucleic acid binding protein, putative
nr
ID XP_002521018.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q9SR34
description Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1
trembl
ID B9S4W1
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0993110 PE=4 SV=1
Gene Ontology
ID GO:0046872
description transcriptional regulator superman-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001817_070 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_154646_010 0.0029014501 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
3 Hb_000135_040 0.0076337745 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At5g56810 [Jatropha curcas]
4 Hb_008953_020 0.0078258074 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
5 Hb_008221_010 0.0127468944 - - hypothetical protein JCGZ_10961 [Jatropha curcas]
6 Hb_013654_020 0.0163831596 - - putative prolin-rich extensin-like receptor protein kinase family protein [Zea mays]
7 Hb_048653_010 0.0165254217 - - PREDICTED: mavicyanin [Jatropha curcas]
8 Hb_042239_010 0.0177879509 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
9 Hb_000238_010 0.0203517324 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000370_050 0.02206549 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
11 Hb_003702_020 0.0221010159 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
12 Hb_002154_090 0.0223141003 - - -
13 Hb_008092_010 0.0225447961 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
14 Hb_007592_010 0.0246908837 - - PREDICTED: uncharacterized protein LOC105118874 [Populus euphratica]
15 Hb_005426_010 0.0248450318 - - polyprotein [Oryza australiensis]
16 Hb_002342_040 0.0352272029 - - FERONIA, partial [Arabis alpina]
17 Hb_122911_010 0.0424256829 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
18 Hb_175426_010 0.0455452114 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
19 Hb_000045_270 0.0481069205 - - conserved hypothetical protein [Ricinus communis]
20 Hb_039814_010 0.0496940459 - - hypothetical protein JCGZ_05023 [Jatropha curcas]

Gene co-expression network

sample Hb_001817_070 Hb_001817_070 Hb_154646_010 Hb_154646_010 Hb_001817_070--Hb_154646_010 Hb_000135_040 Hb_000135_040 Hb_001817_070--Hb_000135_040 Hb_008953_020 Hb_008953_020 Hb_001817_070--Hb_008953_020 Hb_008221_010 Hb_008221_010 Hb_001817_070--Hb_008221_010 Hb_013654_020 Hb_013654_020 Hb_001817_070--Hb_013654_020 Hb_048653_010 Hb_048653_010 Hb_001817_070--Hb_048653_010 Hb_154646_010--Hb_000135_040 Hb_154646_010--Hb_008953_020 Hb_154646_010--Hb_008221_010 Hb_000238_010 Hb_000238_010 Hb_154646_010--Hb_000238_010 Hb_154646_010--Hb_013654_020 Hb_000135_040--Hb_008953_020 Hb_000135_040--Hb_008221_010 Hb_000135_040--Hb_013654_020 Hb_000135_040--Hb_048653_010 Hb_042239_010 Hb_042239_010 Hb_000135_040--Hb_042239_010 Hb_008953_020--Hb_008221_010 Hb_008953_020--Hb_013654_020 Hb_008953_020--Hb_048653_010 Hb_008953_020--Hb_042239_010 Hb_008221_010--Hb_013654_020 Hb_008221_010--Hb_048653_010 Hb_008221_010--Hb_042239_010 Hb_000370_050 Hb_000370_050 Hb_008221_010--Hb_000370_050 Hb_013654_020--Hb_048653_010 Hb_013654_020--Hb_042239_010 Hb_013654_020--Hb_000370_050 Hb_003702_020 Hb_003702_020 Hb_013654_020--Hb_003702_020 Hb_008092_010 Hb_008092_010 Hb_013654_020--Hb_008092_010 Hb_048653_010--Hb_042239_010 Hb_048653_010--Hb_000370_050 Hb_048653_010--Hb_003702_020 Hb_048653_010--Hb_008092_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.14926 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0729839 0

CAGE analysis