Hb_001817_120

Information

Type -
Description -
Location Contig1817: 104736-106797
Sequence    

Annotation

kegg
ID fve:101303864
description poly [ADP-ribose] polymerase 1-like
nr
ID XP_011457987.1
description PREDICTED: poly [ADP-ribose] polymerase 1 [Fragaria vesca subsp. vesca]
swissprot
ID P31669
description Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenopus laevis GN=parp1 PE=2 SV=1
trembl
ID A0A061DQX6
description Poly(ADP-ribose) polymerase 2, putative isoform 2 OS=Theobroma cacao GN=TCM_004119 PE=4 SV=1
Gene Ontology
ID GO:0005634
description poly

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001817_120 0.0 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Fragaria vesca subsp. vesca]
2 Hb_002928_020 0.1546127739 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
3 Hb_002000_090 0.1664490052 - - 60S ribosomal protein L3B [Hevea brasiliensis]
4 Hb_000254_010 0.1823299548 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
5 Hb_073808_010 0.1857595983 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]
6 Hb_001179_010 0.1870216422 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
7 Hb_007237_010 0.1878688625 - - conserved hypothetical protein [Ricinus communis]
8 Hb_033234_010 0.1937744761 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]
9 Hb_000062_640 0.1947493167 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
10 Hb_000414_140 0.1958960691 - - Chalcone synthase, putative [Ricinus communis]
11 Hb_001353_020 0.1964741393 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000363_250 0.197672625 - - PREDICTED: pirin-like protein [Malus domestica]
13 Hb_016564_060 0.1983448504 - - PREDICTED: uncharacterized protein LOC105628249 [Jatropha curcas]
14 Hb_000914_150 0.1996398967 - - ADP,ATP carrier protein, putative [Ricinus communis]
15 Hb_003025_150 0.2006490285 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005408_100 0.2016487017 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
17 Hb_000466_070 0.2027720591 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
18 Hb_000613_250 0.2061548401 - - PREDICTED: nudix hydrolase 2-like [Jatropha curcas]
19 Hb_006185_040 0.2068721152 - - PREDICTED: verprolin [Jatropha curcas]
20 Hb_042202_020 0.2072786538 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001817_120 Hb_001817_120 Hb_002928_020 Hb_002928_020 Hb_001817_120--Hb_002928_020 Hb_002000_090 Hb_002000_090 Hb_001817_120--Hb_002000_090 Hb_000254_010 Hb_000254_010 Hb_001817_120--Hb_000254_010 Hb_073808_010 Hb_073808_010 Hb_001817_120--Hb_073808_010 Hb_001179_010 Hb_001179_010 Hb_001817_120--Hb_001179_010 Hb_007237_010 Hb_007237_010 Hb_001817_120--Hb_007237_010 Hb_000466_070 Hb_000466_070 Hb_002928_020--Hb_000466_070 Hb_009541_010 Hb_009541_010 Hb_002928_020--Hb_009541_010 Hb_002943_010 Hb_002943_010 Hb_002928_020--Hb_002943_010 Hb_012760_090 Hb_012760_090 Hb_002928_020--Hb_012760_090 Hb_002928_020--Hb_000254_010 Hb_002284_080 Hb_002284_080 Hb_002000_090--Hb_002284_080 Hb_001353_020 Hb_001353_020 Hb_002000_090--Hb_001353_020 Hb_002000_090--Hb_012760_090 Hb_002119_040 Hb_002119_040 Hb_002000_090--Hb_002119_040 Hb_034507_090 Hb_034507_090 Hb_002000_090--Hb_034507_090 Hb_000735_140 Hb_000735_140 Hb_002000_090--Hb_000735_140 Hb_001048_100 Hb_001048_100 Hb_000254_010--Hb_001048_100 Hb_001189_100 Hb_001189_100 Hb_000254_010--Hb_001189_100 Hb_042202_020 Hb_042202_020 Hb_000254_010--Hb_042202_020 Hb_033234_010 Hb_033234_010 Hb_000254_010--Hb_033234_010 Hb_000847_020 Hb_000847_020 Hb_000254_010--Hb_000847_020 Hb_000024_130 Hb_000024_130 Hb_000254_010--Hb_000024_130 Hb_073808_010--Hb_001189_100 Hb_002671_060 Hb_002671_060 Hb_073808_010--Hb_002671_060 Hb_000085_380 Hb_000085_380 Hb_073808_010--Hb_000085_380 Hb_001728_130 Hb_001728_130 Hb_073808_010--Hb_001728_130 Hb_001247_270 Hb_001247_270 Hb_073808_010--Hb_001247_270 Hb_073808_010--Hb_042202_020 Hb_001357_060 Hb_001357_060 Hb_001179_010--Hb_001357_060 Hb_000329_790 Hb_000329_790 Hb_001179_010--Hb_000329_790 Hb_000007_440 Hb_000007_440 Hb_001179_010--Hb_000007_440 Hb_007483_080 Hb_007483_080 Hb_001179_010--Hb_007483_080 Hb_000096_110 Hb_000096_110 Hb_001179_010--Hb_000096_110 Hb_026698_020 Hb_026698_020 Hb_001179_010--Hb_026698_020 Hb_000959_010 Hb_000959_010 Hb_007237_010--Hb_000959_010 Hb_060198_010 Hb_060198_010 Hb_007237_010--Hb_060198_010 Hb_006040_170 Hb_006040_170 Hb_007237_010--Hb_006040_170 Hb_000120_870 Hb_000120_870 Hb_007237_010--Hb_000120_870 Hb_000465_450 Hb_000465_450 Hb_007237_010--Hb_000465_450 Hb_007951_070 Hb_007951_070 Hb_007237_010--Hb_007951_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.411601 0.235719 0.475051 0.0351441 0.0332493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.120755 0.194281 0.267557

CAGE analysis