Hb_001817_140

Information

Type transcription factor
Description TF Family: LOB
Location Contig1817: 109764-110868
Sequence    

Annotation

kegg
ID rcu:RCOM_0993260
description LOB domain-containing protein, putative
nr
ID XP_002521022.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9SLB7
description LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=2 SV=1
trembl
ID B9S4L6
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0993260 PE=4 SV=1
Gene Ontology
ID GO:0005634
description lob domain-containing protein 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001817_140 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_000363_270 0.2167572333 - - hypothetical protein PRUPE_ppa024846mg [Prunus persica]
3 Hb_001911_070 0.2170414164 - - -
4 Hb_001016_070 0.2184747769 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
5 Hb_001754_140 0.2581772806 - - PREDICTED: uncharacterized protein LOC105643419 [Jatropha curcas]
6 Hb_001623_070 0.2608557844 - - cytochrome B5 isoform 1, putative [Ricinus communis]
7 Hb_001102_100 0.2696734846 - - PREDICTED: uncharacterized protein LOC105140429 isoform X2 [Populus euphratica]
8 Hb_003057_020 0.2704061067 - - 40S ribosomal protein S23, putative [Ricinus communis]
9 Hb_000212_210 0.2718950344 - - unnamed protein product [Coffea canephora]
10 Hb_000975_270 0.2730135644 - - PREDICTED: histone H2B.11-like [Phoenix dactylifera]
11 Hb_001017_080 0.2739106398 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
12 Hb_011224_040 0.2784330771 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
13 Hb_003376_380 0.2796838799 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
14 Hb_001488_400 0.2799201526 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
15 Hb_024650_040 0.2845950205 - - PREDICTED: josephin-like protein [Jatropha curcas]
16 Hb_002890_070 0.2866631469 - - ATP-dependent RNA helicase family protein [Populus trichocarpa]
17 Hb_000139_430 0.2902502022 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
18 Hb_002811_090 0.2936694814 - - 40S ribosomal protein S24A [Hevea brasiliensis]
19 Hb_005144_070 0.2941793934 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006028_020 0.2943198584 - - PREDICTED: 60S ribosomal protein L38-like [Cicer arietinum]

Gene co-expression network

sample Hb_001817_140 Hb_001817_140 Hb_000363_270 Hb_000363_270 Hb_001817_140--Hb_000363_270 Hb_001911_070 Hb_001911_070 Hb_001817_140--Hb_001911_070 Hb_001016_070 Hb_001016_070 Hb_001817_140--Hb_001016_070 Hb_001754_140 Hb_001754_140 Hb_001817_140--Hb_001754_140 Hb_001623_070 Hb_001623_070 Hb_001817_140--Hb_001623_070 Hb_001102_100 Hb_001102_100 Hb_001817_140--Hb_001102_100 Hb_000363_270--Hb_001016_070 Hb_186158_010 Hb_186158_010 Hb_000363_270--Hb_186158_010 Hb_000363_270--Hb_001623_070 Hb_002259_140 Hb_002259_140 Hb_000363_270--Hb_002259_140 Hb_000363_270--Hb_001911_070 Hb_001911_070--Hb_002259_140 Hb_001911_070--Hb_001623_070 Hb_003120_100 Hb_003120_100 Hb_001911_070--Hb_003120_100 Hb_021906_010 Hb_021906_010 Hb_001911_070--Hb_021906_010 Hb_000025_440 Hb_000025_440 Hb_001911_070--Hb_000025_440 Hb_001016_070--Hb_001623_070 Hb_011224_040 Hb_011224_040 Hb_001016_070--Hb_011224_040 Hb_000975_270 Hb_000975_270 Hb_001016_070--Hb_000975_270 Hb_001016_070--Hb_186158_010 Hb_007885_010 Hb_007885_010 Hb_001754_140--Hb_007885_010 Hb_003058_080 Hb_003058_080 Hb_001754_140--Hb_003058_080 Hb_000212_210 Hb_000212_210 Hb_001754_140--Hb_000212_210 Hb_001512_050 Hb_001512_050 Hb_001754_140--Hb_001512_050 Hb_006028_020 Hb_006028_020 Hb_001754_140--Hb_006028_020 Hb_000809_060 Hb_000809_060 Hb_001754_140--Hb_000809_060 Hb_002890_070 Hb_002890_070 Hb_001623_070--Hb_002890_070 Hb_003376_380 Hb_003376_380 Hb_001623_070--Hb_003376_380 Hb_003398_020 Hb_003398_020 Hb_001623_070--Hb_003398_020 Hb_001439_090 Hb_001439_090 Hb_001623_070--Hb_001439_090 Hb_011609_110 Hb_011609_110 Hb_001623_070--Hb_011609_110 Hb_042871_010 Hb_042871_010 Hb_001623_070--Hb_042871_010 Hb_000270_730 Hb_000270_730 Hb_001102_100--Hb_000270_730 Hb_001266_030 Hb_001266_030 Hb_001102_100--Hb_001266_030 Hb_001277_080 Hb_001277_080 Hb_001102_100--Hb_001277_080 Hb_005772_010 Hb_005772_010 Hb_001102_100--Hb_005772_010 Hb_183612_080 Hb_183612_080 Hb_001102_100--Hb_183612_080 Hb_002784_140 Hb_002784_140 Hb_001102_100--Hb_002784_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0232692 0 0.0523263 0.0371158 0 0.0260718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0533331 0.251668 0 0.0168851 0

CAGE analysis