Hb_001817_150

Information

Type -
Description -
Location Contig1817: 130488-135455
Sequence    

Annotation

kegg
ID rcu:RCOM_0993370
description trehalose-6-phosphate synthase, putative (EC:2.4.1.15 3.1.3.12)
nr
ID XP_002521023.1
description trehalose-6-phosphate synthase, putative [Ricinus communis]
swissprot
ID Q9LRA7
description Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 OS=Arabidopsis thaliana GN=TPS9 PE=2 SV=1
trembl
ID B9S4L7
description Trehalose-6-phosphate synthase, putative OS=Ricinus communis GN=RCOM_0993370 PE=4 SV=1
Gene Ontology
ID GO:0003825
description probable -trehalose-phosphate synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17664: 128287-135532 , PASA_asmbl_17665: 128287-135532 , PASA_asmbl_17666: 128287-135669 , PASA_asmbl_17670: 133268-135349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001817_150 0.0 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
2 Hb_000563_600 0.0891823409 - - PREDICTED: uncharacterized protein LOC104428079 [Eucalyptus grandis]
3 Hb_014361_150 0.1019287192 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
4 Hb_000599_080 0.1065957484 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
5 Hb_010362_030 0.1111057558 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
6 Hb_057878_010 0.1142927725 - - hypothetical protein VITISV_036304 [Vitis vinifera]
7 Hb_000567_190 0.1151025479 - - PREDICTED: protein SCAR3 isoform X2 [Jatropha curcas]
8 Hb_000479_150 0.1163178202 - - glycosyl transferase family 8 family protein [Populus trichocarpa]
9 Hb_000042_340 0.1193520243 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
10 Hb_000260_440 0.1210058318 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
11 Hb_102291_010 0.1224472902 - - PREDICTED: histone chaperone ASF1B [Populus euphratica]
12 Hb_000718_070 0.1237394659 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002054_050 0.1257133444 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
14 Hb_000139_190 0.1261554271 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
15 Hb_000661_110 0.1271821446 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
16 Hb_000818_010 0.1290928549 - - Calmodulin-domain protein kinase 5 isoform 1 [Theobroma cacao]
17 Hb_039605_010 0.1292444603 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
18 Hb_002928_010 0.1301353061 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
19 Hb_000309_040 0.1319772083 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
20 Hb_001247_130 0.1323632368 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]

Gene co-expression network

sample Hb_001817_150 Hb_001817_150 Hb_000563_600 Hb_000563_600 Hb_001817_150--Hb_000563_600 Hb_014361_150 Hb_014361_150 Hb_001817_150--Hb_014361_150 Hb_000599_080 Hb_000599_080 Hb_001817_150--Hb_000599_080 Hb_010362_030 Hb_010362_030 Hb_001817_150--Hb_010362_030 Hb_057878_010 Hb_057878_010 Hb_001817_150--Hb_057878_010 Hb_000567_190 Hb_000567_190 Hb_001817_150--Hb_000567_190 Hb_000563_600--Hb_000599_080 Hb_004631_190 Hb_004631_190 Hb_000563_600--Hb_004631_190 Hb_002311_070 Hb_002311_070 Hb_000563_600--Hb_002311_070 Hb_000922_020 Hb_000922_020 Hb_000563_600--Hb_000922_020 Hb_000002_490 Hb_000002_490 Hb_000563_600--Hb_000002_490 Hb_000718_070 Hb_000718_070 Hb_000563_600--Hb_000718_070 Hb_000260_440 Hb_000260_440 Hb_014361_150--Hb_000260_440 Hb_002379_050 Hb_002379_050 Hb_014361_150--Hb_002379_050 Hb_004357_020 Hb_004357_020 Hb_014361_150--Hb_004357_020 Hb_000760_020 Hb_000760_020 Hb_014361_150--Hb_000760_020 Hb_000125_200 Hb_000125_200 Hb_014361_150--Hb_000125_200 Hb_005306_160 Hb_005306_160 Hb_014361_150--Hb_005306_160 Hb_000042_340 Hb_000042_340 Hb_000599_080--Hb_000042_340 Hb_000599_080--Hb_000922_020 Hb_000031_280 Hb_000031_280 Hb_000599_080--Hb_000031_280 Hb_000525_100 Hb_000525_100 Hb_000599_080--Hb_000525_100 Hb_032202_080 Hb_032202_080 Hb_000599_080--Hb_032202_080 Hb_001405_190 Hb_001405_190 Hb_010362_030--Hb_001405_190 Hb_010998_040 Hb_010998_040 Hb_010362_030--Hb_010998_040 Hb_143766_110 Hb_143766_110 Hb_010362_030--Hb_143766_110 Hb_010362_030--Hb_000567_190 Hb_001140_030 Hb_001140_030 Hb_010362_030--Hb_001140_030 Hb_000139_190 Hb_000139_190 Hb_010362_030--Hb_000139_190 Hb_002400_470 Hb_002400_470 Hb_057878_010--Hb_002400_470 Hb_002078_020 Hb_002078_020 Hb_057878_010--Hb_002078_020 Hb_011310_210 Hb_011310_210 Hb_057878_010--Hb_011310_210 Hb_000442_150 Hb_000442_150 Hb_057878_010--Hb_000442_150 Hb_000236_380 Hb_000236_380 Hb_057878_010--Hb_000236_380 Hb_002671_140 Hb_002671_140 Hb_057878_010--Hb_002671_140 Hb_000879_180 Hb_000879_180 Hb_000567_190--Hb_000879_180 Hb_001635_040 Hb_001635_040 Hb_000567_190--Hb_001635_040 Hb_000635_040 Hb_000635_040 Hb_000567_190--Hb_000635_040 Hb_000130_420 Hb_000130_420 Hb_000567_190--Hb_000130_420 Hb_001761_120 Hb_001761_120 Hb_000567_190--Hb_001761_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.0993 21.3159 29.6048 22.3328 24.1019 19.7326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2598 9.62148 22.7287 5.27484 11.1213

CAGE analysis