Hb_001817_170

Information

Type -
Description -
Location Contig1817: 148777-163829
Sequence    

Annotation

kegg
ID rcu:RCOM_0993500
description AP-1 complex subunit gamma-2, putative
nr
ID XP_012092070.1
description PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
swissprot
ID Q9ZUI6
description AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana GN=At1g60070 PE=1 SV=2
trembl
ID A0A067JMU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21796 PE=4 SV=1
Gene Ontology
ID GO:0005794
description ap-1 complex subunit gamma-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17675: 157314-157427 , PASA_asmbl_17676: 158825-160440 , PASA_asmbl_17677: 160547-161688 , PASA_asmbl_17678: 161716-163752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001817_170 0.0 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
2 Hb_003758_010 0.0468744969 transcription factor TF Family: VOZ PREDICTED: transcription factor VOZ1 isoform X1 [Jatropha curcas]
3 Hb_006189_020 0.0538738375 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
4 Hb_002042_050 0.0583150063 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
5 Hb_003626_070 0.0589868302 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
6 Hb_002071_070 0.0627296014 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
7 Hb_000139_080 0.0634234489 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
8 Hb_000510_360 0.0639301342 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
9 Hb_000703_190 0.0648982786 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
10 Hb_005214_140 0.0651157149 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
11 Hb_073171_070 0.0662006688 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
12 Hb_001488_020 0.0671797637 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
13 Hb_033312_040 0.0679912576 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
14 Hb_060980_010 0.0682153471 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
15 Hb_027506_010 0.0692889507 - - PREDICTED: cullin-4 [Jatropha curcas]
16 Hb_016172_030 0.0693858465 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
17 Hb_000270_190 0.0719303622 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
18 Hb_000773_040 0.0727328606 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
19 Hb_000567_230 0.0727422075 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
20 Hb_000046_500 0.0730316748 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]

Gene co-expression network

sample Hb_001817_170 Hb_001817_170 Hb_003758_010 Hb_003758_010 Hb_001817_170--Hb_003758_010 Hb_006189_020 Hb_006189_020 Hb_001817_170--Hb_006189_020 Hb_002042_050 Hb_002042_050 Hb_001817_170--Hb_002042_050 Hb_003626_070 Hb_003626_070 Hb_001817_170--Hb_003626_070 Hb_002071_070 Hb_002071_070 Hb_001817_170--Hb_002071_070 Hb_000139_080 Hb_000139_080 Hb_001817_170--Hb_000139_080 Hb_000510_360 Hb_000510_360 Hb_003758_010--Hb_000510_360 Hb_027506_010 Hb_027506_010 Hb_003758_010--Hb_027506_010 Hb_033312_040 Hb_033312_040 Hb_003758_010--Hb_033312_040 Hb_000206_160 Hb_000206_160 Hb_003758_010--Hb_000206_160 Hb_003758_010--Hb_006189_020 Hb_006189_020--Hb_033312_040 Hb_000409_050 Hb_000409_050 Hb_006189_020--Hb_000409_050 Hb_004333_040 Hb_004333_040 Hb_006189_020--Hb_004333_040 Hb_006189_020--Hb_000510_360 Hb_006189_020--Hb_000139_080 Hb_002272_030 Hb_002272_030 Hb_002042_050--Hb_002272_030 Hb_020178_040 Hb_020178_040 Hb_002042_050--Hb_020178_040 Hb_000243_260 Hb_000243_260 Hb_002042_050--Hb_000243_260 Hb_006100_020 Hb_006100_020 Hb_002042_050--Hb_006100_020 Hb_000567_230 Hb_000567_230 Hb_002042_050--Hb_000567_230 Hb_003626_070--Hb_000139_080 Hb_001635_110 Hb_001635_110 Hb_003626_070--Hb_001635_110 Hb_003626_070--Hb_006189_020 Hb_000476_060 Hb_000476_060 Hb_003626_070--Hb_000476_060 Hb_000103_290 Hb_000103_290 Hb_003626_070--Hb_000103_290 Hb_000856_040 Hb_000856_040 Hb_002071_070--Hb_000856_040 Hb_002071_070--Hb_002042_050 Hb_003058_260 Hb_003058_260 Hb_002071_070--Hb_003058_260 Hb_002890_130 Hb_002890_130 Hb_002071_070--Hb_002890_130 Hb_002830_010 Hb_002830_010 Hb_002071_070--Hb_002830_010 Hb_012632_010 Hb_012632_010 Hb_002071_070--Hb_012632_010 Hb_003098_070 Hb_003098_070 Hb_000139_080--Hb_003098_070 Hb_000139_080--Hb_033312_040 Hb_000078_140 Hb_000078_140 Hb_000139_080--Hb_000078_140 Hb_000169_020 Hb_000169_020 Hb_000139_080--Hb_000169_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.84724 10.8736 12.6249 13.6277 7.64725 5.26037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.32454 6.20903 8.80447 12.015 12.7519

CAGE analysis