Hb_001817_180

Information

Type -
Description -
Location Contig1817: 165209-167554
Sequence    

Annotation

kegg
ID rcu:RCOM_0993520
description ring finger protein, putative
nr
ID XP_012092069.1
description PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
swissprot
ID Q9FL07
description RING-H2 finger protein ATL46 OS=Arabidopsis thaliana GN=ATL46 PE=2 SV=1
trembl
ID A0A067JP67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21795 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl46

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17680: 165836-165982
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001817_180 0.0 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
2 Hb_000138_040 0.0770121095 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
3 Hb_001454_060 0.0883473269 - - uncharacterized protein LOC100527252 [Glycine max]
4 Hb_001057_010 0.098373364 - - cation-transporting atpase plant, putative [Ricinus communis]
5 Hb_000358_080 0.0998776277 - - Ribonuclease 3 [Gossypium arboreum]
6 Hb_029281_010 0.1018124896 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
7 Hb_000172_400 0.1023929097 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
8 Hb_015401_020 0.1026442736 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_001274_020 0.1066788038 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
10 Hb_000976_150 0.1073387723 - - PREDICTED: serine/arginine-rich splicing factor SR45 [Jatropha curcas]
11 Hb_000490_030 0.1075701707 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
12 Hb_005314_010 0.1109436868 - - nucleotide binding protein, putative [Ricinus communis]
13 Hb_029866_130 0.1109705678 - - hypothetical protein JCGZ_00035 [Jatropha curcas]
14 Hb_000413_130 0.1120712321 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
15 Hb_000608_120 0.1127654842 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
16 Hb_005839_120 0.114235592 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
17 Hb_006478_110 0.1151007951 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
18 Hb_000340_510 0.1153852799 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
19 Hb_002169_010 0.1154648712 - - PREDICTED: la-related protein 6B [Jatropha curcas]
20 Hb_011671_330 0.1157570979 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001817_180 Hb_001817_180 Hb_000138_040 Hb_000138_040 Hb_001817_180--Hb_000138_040 Hb_001454_060 Hb_001454_060 Hb_001817_180--Hb_001454_060 Hb_001057_010 Hb_001057_010 Hb_001817_180--Hb_001057_010 Hb_000358_080 Hb_000358_080 Hb_001817_180--Hb_000358_080 Hb_029281_010 Hb_029281_010 Hb_001817_180--Hb_029281_010 Hb_000172_400 Hb_000172_400 Hb_001817_180--Hb_000172_400 Hb_000138_040--Hb_000358_080 Hb_000134_350 Hb_000134_350 Hb_000138_040--Hb_000134_350 Hb_009382_020 Hb_009382_020 Hb_000138_040--Hb_009382_020 Hb_000138_040--Hb_029281_010 Hb_001274_020 Hb_001274_020 Hb_000138_040--Hb_001274_020 Hb_003494_240 Hb_003494_240 Hb_001454_060--Hb_003494_240 Hb_000608_120 Hb_000608_120 Hb_001454_060--Hb_000608_120 Hb_000078_130 Hb_000078_130 Hb_001454_060--Hb_000078_130 Hb_000703_080 Hb_000703_080 Hb_001454_060--Hb_000703_080 Hb_001454_060--Hb_000172_400 Hb_012654_010 Hb_012654_010 Hb_001057_010--Hb_012654_010 Hb_000340_510 Hb_000340_510 Hb_001057_010--Hb_000340_510 Hb_005237_010 Hb_005237_010 Hb_001057_010--Hb_005237_010 Hb_017168_010 Hb_017168_010 Hb_001057_010--Hb_017168_010 Hb_003097_190 Hb_003097_190 Hb_001057_010--Hb_003097_190 Hb_002942_220 Hb_002942_220 Hb_001057_010--Hb_002942_220 Hb_000490_030 Hb_000490_030 Hb_000358_080--Hb_000490_030 Hb_007943_080 Hb_007943_080 Hb_000358_080--Hb_007943_080 Hb_001936_050 Hb_001936_050 Hb_000358_080--Hb_001936_050 Hb_006091_030 Hb_006091_030 Hb_000358_080--Hb_006091_030 Hb_010710_010 Hb_010710_010 Hb_000358_080--Hb_010710_010 Hb_002169_010 Hb_002169_010 Hb_029281_010--Hb_002169_010 Hb_029281_010--Hb_000490_030 Hb_011496_010 Hb_011496_010 Hb_029281_010--Hb_011496_010 Hb_005314_010 Hb_005314_010 Hb_029281_010--Hb_005314_010 Hb_001439_180 Hb_001439_180 Hb_029281_010--Hb_001439_180 Hb_000413_130 Hb_000413_130 Hb_029281_010--Hb_000413_130 Hb_002207_100 Hb_002207_100 Hb_000172_400--Hb_002207_100 Hb_000784_090 Hb_000784_090 Hb_000172_400--Hb_000784_090 Hb_000172_400--Hb_000340_510 Hb_001030_120 Hb_001030_120 Hb_000172_400--Hb_001030_120 Hb_003638_030 Hb_003638_030 Hb_000172_400--Hb_003638_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.211 11.4041 0.92479 2.14326 20.1308 16.4132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3204 9.45179 13.4738 6.4077 0.943014

CAGE analysis