Hb_001817_200

Information

Type -
Description -
Location Contig1817: 196827-197054
Sequence    

Annotation

kegg
ID cit:102615740
description uncharacterized LOC102615740
nr
ID KDO82529.1
description hypothetical protein CISIN_1g037825mg [Citrus sinensis]
swissprot
ID Q9LXR7
description Transcription factor PAR2 OS=Arabidopsis thaliana GN=PAR2 PE=3 SV=1
trembl
ID A0A067GSA5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g037825mg PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor par2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001817_200 0.0 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
2 Hb_002391_260 0.0018795489 - - hypothetical protein RCOM_0017280 [Ricinus communis]
3 Hb_001571_070 0.0027158729 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
4 Hb_000413_090 0.0058967474 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
5 Hb_002259_100 0.0070099609 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
6 Hb_004645_060 0.0119282729 - - PREDICTED: uncharacterized protein LOC105630948 [Jatropha curcas]
7 Hb_001322_060 0.0122770231 - - unnamed protein product [Vitis vinifera]
8 Hb_000003_800 0.0122945854 - - conserved hypothetical protein [Ricinus communis]
9 Hb_137288_010 0.013246525 - - hypothetical protein B456_003G055000 [Gossypium raimondii]
10 Hb_003266_110 0.0141757839 - - ATP binding protein, putative [Ricinus communis]
11 Hb_001948_060 0.0169981974 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
12 Hb_020479_010 0.018238832 - - cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
13 Hb_187418_010 0.020687523 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
14 Hb_009323_010 0.023339876 - - hypothetical protein POPTR_0008s03350g, partial [Populus trichocarpa]
15 Hb_001504_200 0.0253443439 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]
16 Hb_007552_030 0.0266800523 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21064 [Jatropha curcas]
17 Hb_004712_120 0.0276740214 - - Pectinesterase U1 precursor, putative [Ricinus communis]
18 Hb_003549_110 0.0278660923 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
19 Hb_004126_020 0.0314947316 - - PREDICTED: uncharacterized protein LOC105649549 [Jatropha curcas]
20 Hb_001268_270 0.0350792382 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001817_200 Hb_001817_200 Hb_002391_260 Hb_002391_260 Hb_001817_200--Hb_002391_260 Hb_001571_070 Hb_001571_070 Hb_001817_200--Hb_001571_070 Hb_000413_090 Hb_000413_090 Hb_001817_200--Hb_000413_090 Hb_002259_100 Hb_002259_100 Hb_001817_200--Hb_002259_100 Hb_004645_060 Hb_004645_060 Hb_001817_200--Hb_004645_060 Hb_001322_060 Hb_001322_060 Hb_001817_200--Hb_001322_060 Hb_002391_260--Hb_001571_070 Hb_002391_260--Hb_000413_090 Hb_002391_260--Hb_002259_100 Hb_002391_260--Hb_001322_060 Hb_000003_800 Hb_000003_800 Hb_002391_260--Hb_000003_800 Hb_001571_070--Hb_000413_090 Hb_001571_070--Hb_001322_060 Hb_001571_070--Hb_000003_800 Hb_001571_070--Hb_002259_100 Hb_000413_090--Hb_001322_060 Hb_000413_090--Hb_000003_800 Hb_137288_010 Hb_137288_010 Hb_000413_090--Hb_137288_010 Hb_002259_100--Hb_004645_060 Hb_002259_100--Hb_000413_090 Hb_009323_010 Hb_009323_010 Hb_002259_100--Hb_009323_010 Hb_004645_060--Hb_009323_010 Hb_004645_060--Hb_002391_260 Hb_004645_060--Hb_001571_070 Hb_007552_030 Hb_007552_030 Hb_004645_060--Hb_007552_030 Hb_001322_060--Hb_000003_800 Hb_001322_060--Hb_137288_010 Hb_003266_110 Hb_003266_110 Hb_001322_060--Hb_003266_110 Hb_001948_060 Hb_001948_060 Hb_001322_060--Hb_001948_060 Hb_020479_010 Hb_020479_010 Hb_001322_060--Hb_020479_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 17.4755 7.2119 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis