Hb_001818_010

Information

Type -
Description -
Location Contig1818: 5146-5733
Sequence    

Annotation

kegg
ID rcu:RCOM_0042270
description Disease resistance response protein, putative
nr
ID XP_002531174.1
description Disease resistance response protein, putative [Ricinus communis]
swissprot
ID Q9C523
description Dirigent protein 19 OS=Arabidopsis thaliana GN=DIR19 PE=2 SV=1
trembl
ID B9SYV5
description Disease resistance response protein, putative OS=Ricinus communis GN=RCOM_0042270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17688: 5029-5658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001818_010 0.0 - - Disease resistance response protein, putative [Ricinus communis]
2 Hb_002260_140 0.0478517067 - - conserved hypothetical protein [Ricinus communis]
3 Hb_051212_020 0.0553073621 - - PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Jatropha curcas]
4 Hb_009079_020 0.0672479244 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
5 Hb_000866_130 0.0746255627 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
6 Hb_112950_010 0.0755051994 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
7 Hb_135757_030 0.07595442 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
8 Hb_003090_220 0.0767330642 - - PREDICTED: copper transporter 4 [Jatropha curcas]
9 Hb_006153_140 0.077296408 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
10 Hb_001789_230 0.084921259 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000408_060 0.0858695059 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
12 Hb_002686_220 0.0859338883 - - PREDICTED: expansin-A15-like [Jatropha curcas]
13 Hb_003598_050 0.0889464733 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
14 Hb_000207_060 0.0903688719 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
15 Hb_003680_240 0.0911315548 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
16 Hb_007122_020 0.0942164405 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
17 Hb_001500_020 0.0989227943 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_006351_050 0.1005090684 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
19 Hb_003175_120 0.1040342619 - - PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]
20 Hb_180088_010 0.1046415945 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_001818_010 Hb_001818_010 Hb_002260_140 Hb_002260_140 Hb_001818_010--Hb_002260_140 Hb_051212_020 Hb_051212_020 Hb_001818_010--Hb_051212_020 Hb_009079_020 Hb_009079_020 Hb_001818_010--Hb_009079_020 Hb_000866_130 Hb_000866_130 Hb_001818_010--Hb_000866_130 Hb_112950_010 Hb_112950_010 Hb_001818_010--Hb_112950_010 Hb_135757_030 Hb_135757_030 Hb_001818_010--Hb_135757_030 Hb_002260_140--Hb_009079_020 Hb_002260_140--Hb_135757_030 Hb_001500_020 Hb_001500_020 Hb_002260_140--Hb_001500_020 Hb_000172_450 Hb_000172_450 Hb_002260_140--Hb_000172_450 Hb_002260_140--Hb_112950_010 Hb_016911_010 Hb_016911_010 Hb_051212_020--Hb_016911_010 Hb_002686_220 Hb_002686_220 Hb_051212_020--Hb_002686_220 Hb_051212_020--Hb_009079_020 Hb_000934_120 Hb_000934_120 Hb_051212_020--Hb_000934_120 Hb_051212_020--Hb_002260_140 Hb_006153_140 Hb_006153_140 Hb_009079_020--Hb_006153_140 Hb_000724_060 Hb_000724_060 Hb_009079_020--Hb_000724_060 Hb_009079_020--Hb_112950_010 Hb_009079_020--Hb_002686_220 Hb_003466_010 Hb_003466_010 Hb_000866_130--Hb_003466_010 Hb_000866_130--Hb_006153_140 Hb_004032_290 Hb_004032_290 Hb_000866_130--Hb_004032_290 Hb_000083_200 Hb_000083_200 Hb_000866_130--Hb_000083_200 Hb_004020_030 Hb_004020_030 Hb_000866_130--Hb_004020_030 Hb_003598_050 Hb_003598_050 Hb_112950_010--Hb_003598_050 Hb_112950_010--Hb_000083_200 Hb_112950_010--Hb_002686_220 Hb_112950_010--Hb_001500_020 Hb_001349_040 Hb_001349_040 Hb_112950_010--Hb_001349_040 Hb_180088_010 Hb_180088_010 Hb_112950_010--Hb_180088_010 Hb_135757_030--Hb_001500_020 Hb_003175_120 Hb_003175_120 Hb_135757_030--Hb_003175_120 Hb_135757_030--Hb_003598_050 Hb_006351_050 Hb_006351_050 Hb_135757_030--Hb_006351_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.04624 3.76801 16.3662 0.0420769 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.335824 2.68189

CAGE analysis