Hb_001818_090

Information

Type -
Description -
Location Contig1818: 106735-110433
Sequence    

Annotation

kegg
ID rcu:RCOM_0041300
description hypothetical protein
nr
ID XP_002531167.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q689D6
description Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1
trembl
ID B9SYU8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0041300 PE=4 SV=1
Gene Ontology
ID GO:0016787
description protein root primordium defective 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17695: 107735-108104 , PASA_asmbl_17697: 108624-108812 , PASA_asmbl_17698: 110047-110385
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001818_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_061090_010 0.0551353097 - - RAN BINDING protein 1 [Populus trichocarpa]
3 Hb_003032_040 0.0614031284 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
4 Hb_004109_090 0.0651296897 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_005663_060 0.0676090275 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
6 Hb_007441_120 0.0692846627 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
7 Hb_000579_140 0.0752093835 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003206_070 0.0756007899 - - organic anion transporter, putative [Ricinus communis]
9 Hb_000409_020 0.076221593 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
10 Hb_019280_040 0.0770887814 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_003092_040 0.0799106031 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
12 Hb_002016_110 0.0804436901 - - transducin family protein [Populus trichocarpa]
13 Hb_003175_010 0.0804976832 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
14 Hb_006400_060 0.0810603434 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
15 Hb_000030_300 0.0811379554 - - Thioredoxin, putative [Ricinus communis]
16 Hb_000777_040 0.0818013773 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
17 Hb_002026_180 0.0819844135 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
18 Hb_000926_280 0.0826902613 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
19 Hb_007416_280 0.0837540967 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002769_050 0.0842299325 - - PREDICTED: endophilin-A1 [Jatropha curcas]

Gene co-expression network

sample Hb_001818_090 Hb_001818_090 Hb_061090_010 Hb_061090_010 Hb_001818_090--Hb_061090_010 Hb_003032_040 Hb_003032_040 Hb_001818_090--Hb_003032_040 Hb_004109_090 Hb_004109_090 Hb_001818_090--Hb_004109_090 Hb_005663_060 Hb_005663_060 Hb_001818_090--Hb_005663_060 Hb_007441_120 Hb_007441_120 Hb_001818_090--Hb_007441_120 Hb_000579_140 Hb_000579_140 Hb_001818_090--Hb_000579_140 Hb_003615_010 Hb_003615_010 Hb_061090_010--Hb_003615_010 Hb_002026_180 Hb_002026_180 Hb_061090_010--Hb_002026_180 Hb_003996_020 Hb_003996_020 Hb_061090_010--Hb_003996_020 Hb_019280_040 Hb_019280_040 Hb_061090_010--Hb_019280_040 Hb_061090_010--Hb_007441_120 Hb_006400_030 Hb_006400_030 Hb_003032_040--Hb_006400_030 Hb_006400_060 Hb_006400_060 Hb_003032_040--Hb_006400_060 Hb_000483_200 Hb_000483_200 Hb_003032_040--Hb_000483_200 Hb_024185_020 Hb_024185_020 Hb_003032_040--Hb_024185_020 Hb_002449_020 Hb_002449_020 Hb_003032_040--Hb_002449_020 Hb_003175_010 Hb_003175_010 Hb_004109_090--Hb_003175_010 Hb_003929_160 Hb_003929_160 Hb_004109_090--Hb_003929_160 Hb_000409_020 Hb_000409_020 Hb_004109_090--Hb_000409_020 Hb_004724_200 Hb_004724_200 Hb_004109_090--Hb_004724_200 Hb_004109_090--Hb_005663_060 Hb_003092_040 Hb_003092_040 Hb_005663_060--Hb_003092_040 Hb_032202_190 Hb_032202_190 Hb_005663_060--Hb_032202_190 Hb_006922_100 Hb_006922_100 Hb_005663_060--Hb_006922_100 Hb_005663_060--Hb_007441_120 Hb_002016_110 Hb_002016_110 Hb_005663_060--Hb_002016_110 Hb_005663_060--Hb_000409_020 Hb_007441_120--Hb_002016_110 Hb_028872_140 Hb_028872_140 Hb_007441_120--Hb_028872_140 Hb_000445_420 Hb_000445_420 Hb_007441_120--Hb_000445_420 Hb_004055_030 Hb_004055_030 Hb_007441_120--Hb_004055_030 Hb_007441_120--Hb_006922_100 Hb_032208_090 Hb_032208_090 Hb_000579_140--Hb_032208_090 Hb_000329_030 Hb_000329_030 Hb_000579_140--Hb_000329_030 Hb_000579_140--Hb_003092_040 Hb_000656_040 Hb_000656_040 Hb_000579_140--Hb_000656_040 Hb_007416_280 Hb_007416_280 Hb_000579_140--Hb_007416_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.0126 2.27185 3.84533 3.848 5.55023 7.68945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.13907 6.76378 9.30341 5.69731 2.91333

CAGE analysis