Hb_001818_110

Information

Type -
Description -
Location Contig1818: 121225-122026
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001818_110 0.0 - - -
2 Hb_003020_290 0.2795743998 - - hypothetical protein CICLE_v10029104mg [Citrus clementina]
3 Hb_000387_090 0.2976347297 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
4 Hb_014440_010 0.3095682374 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
5 Hb_006212_030 0.3303420982 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
6 Hb_001344_030 0.3346455069 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_002888_020 0.3417022234 - - -
8 Hb_007904_010 0.3447384787 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
9 Hb_000757_090 0.3506534488 - - SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]
10 Hb_186054_010 0.352938276 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_004459_070 0.3532546707 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
12 Hb_000445_200 0.3564799433 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
13 Hb_000003_360 0.3628369734 - - Putative inactive purple acid phosphatase 27 [Glycine soja]
14 Hb_156924_020 0.3644924152 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
15 Hb_004994_370 0.3651793134 - - -
16 Hb_116020_010 0.367449192 - - Uncharacterized protein TCM_023639 [Theobroma cacao]
17 Hb_000375_180 0.3699036159 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
18 Hb_104721_010 0.3771331158 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
19 Hb_158235_010 0.3800898588 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
20 Hb_004550_070 0.3812877698 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_001818_110 Hb_001818_110 Hb_003020_290 Hb_003020_290 Hb_001818_110--Hb_003020_290 Hb_000387_090 Hb_000387_090 Hb_001818_110--Hb_000387_090 Hb_014440_010 Hb_014440_010 Hb_001818_110--Hb_014440_010 Hb_006212_030 Hb_006212_030 Hb_001818_110--Hb_006212_030 Hb_001344_030 Hb_001344_030 Hb_001818_110--Hb_001344_030 Hb_002888_020 Hb_002888_020 Hb_001818_110--Hb_002888_020 Hb_158235_010 Hb_158235_010 Hb_003020_290--Hb_158235_010 Hb_005496_100 Hb_005496_100 Hb_003020_290--Hb_005496_100 Hb_001519_020 Hb_001519_020 Hb_003020_290--Hb_001519_020 Hb_003020_290--Hb_001344_030 Hb_000757_090 Hb_000757_090 Hb_003020_290--Hb_000757_090 Hb_186054_010 Hb_186054_010 Hb_003020_290--Hb_186054_010 Hb_007479_030 Hb_007479_030 Hb_000387_090--Hb_007479_030 Hb_000445_200 Hb_000445_200 Hb_000387_090--Hb_000445_200 Hb_000387_090--Hb_001344_030 Hb_116020_010 Hb_116020_010 Hb_000387_090--Hb_116020_010 Hb_013253_030 Hb_013253_030 Hb_000387_090--Hb_013253_030 Hb_033152_040 Hb_033152_040 Hb_000387_090--Hb_033152_040 Hb_004289_040 Hb_004289_040 Hb_014440_010--Hb_004289_040 Hb_178654_020 Hb_178654_020 Hb_014440_010--Hb_178654_020 Hb_156924_020 Hb_156924_020 Hb_014440_010--Hb_156924_020 Hb_014440_010--Hb_000757_090 Hb_000375_180 Hb_000375_180 Hb_014440_010--Hb_000375_180 Hb_006212_030--Hb_003020_290 Hb_000018_050 Hb_000018_050 Hb_006212_030--Hb_000018_050 Hb_012938_010 Hb_012938_010 Hb_006212_030--Hb_012938_010 Hb_005654_010 Hb_005654_010 Hb_006212_030--Hb_005654_010 Hb_000545_120 Hb_000545_120 Hb_006212_030--Hb_000545_120 Hb_006212_030--Hb_000387_090 Hb_001344_030--Hb_000757_090 Hb_001344_030--Hb_186054_010 Hb_001344_030--Hb_156924_020 Hb_001344_030--Hb_158235_010 Hb_104721_010 Hb_104721_010 Hb_001344_030--Hb_104721_010 Hb_094852_010 Hb_094852_010 Hb_001344_030--Hb_094852_010 Hb_002243_070 Hb_002243_070 Hb_002888_020--Hb_002243_070 Hb_039262_010 Hb_039262_010 Hb_002888_020--Hb_039262_010 Hb_002874_040 Hb_002874_040 Hb_002888_020--Hb_002874_040 Hb_004440_080 Hb_004440_080 Hb_002888_020--Hb_004440_080 Hb_086077_020 Hb_086077_020 Hb_002888_020--Hb_086077_020 Hb_000012_160 Hb_000012_160 Hb_002888_020--Hb_000012_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0876156 0 0 0 0.0881777 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.101732 0.159904 0 0 0.463803

CAGE analysis