Hb_001821_010

Information

Type -
Description -
Location Contig1821: 9774-13129
Sequence    

Annotation

kegg
ID rcu:RCOM_1297580
description Protein C9orf78, putative
nr
ID XP_012078827.1
description PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
swissprot
ID Q9NZ63
description Uncharacterized protein C9orf78 OS=Homo sapiens GN=C9orf78 PE=1 SV=1
trembl
ID A0A067KBN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13358 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17721: 9960-13112
cDNA
(Sanger)
(ID:Location)		 043_P22.ab1: 9960-12814

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001821_010 0.0 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
2 Hb_000815_320 0.0479609526 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
3 Hb_001105_030 0.0506633494 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
4 Hb_000056_200 0.0536813602 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
5 Hb_012725_050 0.0580913523 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
6 Hb_002609_020 0.0599768148 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
7 Hb_004735_040 0.064439097 - - PREDICTED: GTP-binding nuclear protein Ran1A-like [Jatropha curcas]
8 Hb_002686_020 0.0645061347 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
9 Hb_004116_190 0.0645414011 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
10 Hb_001157_020 0.0650399405 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
11 Hb_063716_050 0.0651075436 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
12 Hb_001489_060 0.0651449006 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
13 Hb_000059_370 0.0655688158 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
14 Hb_001662_070 0.0669678326 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
15 Hb_003050_080 0.0676358686 - - 40S ribosomal protein S14, putative [Ricinus communis]
16 Hb_000580_090 0.0696095203 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
17 Hb_002214_040 0.0697487051 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
18 Hb_000777_040 0.0707213866 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
19 Hb_000656_240 0.0711467277 - - proteasome subunit alpha type, putative [Ricinus communis]
20 Hb_002226_070 0.0724746121 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001821_010 Hb_001821_010 Hb_000815_320 Hb_000815_320 Hb_001821_010--Hb_000815_320 Hb_001105_030 Hb_001105_030 Hb_001821_010--Hb_001105_030 Hb_000056_200 Hb_000056_200 Hb_001821_010--Hb_000056_200 Hb_012725_050 Hb_012725_050 Hb_001821_010--Hb_012725_050 Hb_002609_020 Hb_002609_020 Hb_001821_010--Hb_002609_020 Hb_004735_040 Hb_004735_040 Hb_001821_010--Hb_004735_040 Hb_001662_070 Hb_001662_070 Hb_000815_320--Hb_001662_070 Hb_001195_480 Hb_001195_480 Hb_000815_320--Hb_001195_480 Hb_000580_090 Hb_000580_090 Hb_000815_320--Hb_000580_090 Hb_004116_190 Hb_004116_190 Hb_000815_320--Hb_004116_190 Hb_005054_060 Hb_005054_060 Hb_000815_320--Hb_005054_060 Hb_000059_370 Hb_000059_370 Hb_001105_030--Hb_000059_370 Hb_001105_030--Hb_012725_050 Hb_001157_020 Hb_001157_020 Hb_001105_030--Hb_001157_020 Hb_001105_030--Hb_000580_090 Hb_001105_030--Hb_000815_320 Hb_000920_180 Hb_000920_180 Hb_000056_200--Hb_000920_180 Hb_003050_080 Hb_003050_080 Hb_000056_200--Hb_003050_080 Hb_000243_030 Hb_000243_030 Hb_000056_200--Hb_000243_030 Hb_063716_050 Hb_063716_050 Hb_000056_200--Hb_063716_050 Hb_002044_080 Hb_002044_080 Hb_000056_200--Hb_002044_080 Hb_012725_050--Hb_001157_020 Hb_028227_020 Hb_028227_020 Hb_012725_050--Hb_028227_020 Hb_002214_040 Hb_002214_040 Hb_012725_050--Hb_002214_040 Hb_000331_080 Hb_000331_080 Hb_012725_050--Hb_000331_080 Hb_002609_020--Hb_004735_040 Hb_009838_080 Hb_009838_080 Hb_002609_020--Hb_009838_080 Hb_002609_020--Hb_000056_200 Hb_002609_020--Hb_000243_030 Hb_002226_070 Hb_002226_070 Hb_002609_020--Hb_002226_070 Hb_004735_040--Hb_001105_030 Hb_001489_060 Hb_001489_060 Hb_004735_040--Hb_001489_060 Hb_001195_280 Hb_001195_280 Hb_004735_040--Hb_001195_280 Hb_000302_010 Hb_000302_010 Hb_004735_040--Hb_000302_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.3312 13.8396 26.7343 19.4122 32.7941 35.8502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.2523 58.0285 37.9454 17.9553 18.809

CAGE analysis