Hb_001821_050

Information

Type -
Description -
Location Contig1821: 39999-40675
Sequence    

Annotation

kegg
ID cic:CICLE_v10032084mg
description hypothetical protein
nr
ID XP_006436846.1
description hypothetical protein CICLE_v10032084mg [Citrus clementina]
swissprot
ID Q9SQ69
description NADPH-dependent codeinone reductase 1-2 OS=Papaver somniferum GN=COR1.2 PE=1 SV=1
trembl
ID V4TJV9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032084mg PE=4 SV=1
Gene Ontology
ID GO:0016491
description non-functional nadph-dependent codeinone reductase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001821_050 0.0 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
2 Hb_004724_300 0.0581409185 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
3 Hb_007102_010 0.0768179987 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
4 Hb_001677_120 0.0911117241 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
5 Hb_134022_010 0.091804594 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
6 Hb_004837_110 0.0946597001 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
7 Hb_002375_080 0.1033606702 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006573_280 0.1047049997 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
9 Hb_001046_040 0.1052286625 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_175670_010 0.1072080757 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
11 Hb_007007_090 0.1076417698 - - phospholipase d beta, putative [Ricinus communis]
12 Hb_000313_100 0.1092864822 rubber biosynthesis Gene Name: CPT4 PREDICTED: rubber cis-polyprenyltransferase HRT2 [Jatropha curcas]
13 Hb_004112_050 0.1109012138 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_009557_080 0.114910154 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
15 Hb_002890_320 0.1149902323 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
16 Hb_115114_010 0.1151903797 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004393_030 0.118935812 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
18 Hb_002010_080 0.1189362322 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
19 Hb_036492_020 0.1193057945 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
20 Hb_002725_080 0.1193552825 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_001821_050 Hb_001821_050 Hb_004724_300 Hb_004724_300 Hb_001821_050--Hb_004724_300 Hb_007102_010 Hb_007102_010 Hb_001821_050--Hb_007102_010 Hb_001677_120 Hb_001677_120 Hb_001821_050--Hb_001677_120 Hb_134022_010 Hb_134022_010 Hb_001821_050--Hb_134022_010 Hb_004837_110 Hb_004837_110 Hb_001821_050--Hb_004837_110 Hb_002375_080 Hb_002375_080 Hb_001821_050--Hb_002375_080 Hb_004724_300--Hb_134022_010 Hb_002725_080 Hb_002725_080 Hb_004724_300--Hb_002725_080 Hb_004724_300--Hb_007102_010 Hb_004112_050 Hb_004112_050 Hb_004724_300--Hb_004112_050 Hb_004724_300--Hb_001677_120 Hb_007102_010--Hb_004837_110 Hb_002890_320 Hb_002890_320 Hb_007102_010--Hb_002890_320 Hb_007102_010--Hb_002375_080 Hb_007102_010--Hb_004112_050 Hb_001677_120--Hb_002375_080 Hb_007007_090 Hb_007007_090 Hb_001677_120--Hb_007007_090 Hb_006573_280 Hb_006573_280 Hb_001677_120--Hb_006573_280 Hb_004945_050 Hb_004945_050 Hb_001677_120--Hb_004945_050 Hb_008810_030 Hb_008810_030 Hb_134022_010--Hb_008810_030 Hb_000402_180 Hb_000402_180 Hb_134022_010--Hb_000402_180 Hb_036492_020 Hb_036492_020 Hb_134022_010--Hb_036492_020 Hb_004393_030 Hb_004393_030 Hb_134022_010--Hb_004393_030 Hb_004837_110--Hb_002890_320 Hb_000054_140 Hb_000054_140 Hb_004837_110--Hb_000054_140 Hb_028928_020 Hb_028928_020 Hb_004837_110--Hb_028928_020 Hb_004837_110--Hb_002375_080 Hb_002375_080--Hb_007007_090 Hb_002097_130 Hb_002097_130 Hb_002375_080--Hb_002097_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.763131 0.323779 0.341109 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0693775 0.324347

CAGE analysis