Hb_001821_110

Information

Type -
Description -
Location Contig1821: 139885-142134
Sequence    

Annotation

kegg
ID rcu:RCOM_1296790
description Alternative oxidase, mitochondrial precursor, putative
nr
ID XP_012084589.1
description PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
swissprot
ID Q40294
description Ubiquinol oxidase, mitochondrial OS=Mangifera indica GN=AOMI 1 PE=1 SV=2
trembl
ID A0A067JTY8
description Ubiquinol oxidase OS=Jatropha curcas GN=JCGZ_20176 PE=3 SV=1
Gene Ontology
ID GO:0005743
description ubiquinol mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17732: 140060-142833
cDNA
(Sanger)
(ID:Location)		 034_O11.ab1: 140083-141789 , 036_E21.ab1: 140437-142600 , 038_P10.ab1: 140083-141759

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001821_110 0.0 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
2 Hb_004545_110 0.0779772892 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
3 Hb_000069_720 0.0833029796 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
4 Hb_000167_010 0.0900694006 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002272_270 0.0907402178 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
6 Hb_000120_370 0.0910311003 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
7 Hb_005288_130 0.0951979367 - - protein with unknown function [Ricinus communis]
8 Hb_000130_270 0.0962985212 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
9 Hb_000347_240 0.0969800118 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
10 Hb_000666_100 0.0981450823 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
11 Hb_008616_050 0.0982356912 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
12 Hb_023371_020 0.0993747989 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
13 Hb_000663_060 0.1006096204 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
14 Hb_001301_110 0.1008199803 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
15 Hb_023313_030 0.1014195275 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001946_390 0.1017126241 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
17 Hb_004157_050 0.1023626237 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
18 Hb_000179_270 0.1027617636 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
19 Hb_003207_180 0.1030996091 - - PREDICTED: uncharacterized protein LOC105645887 isoform X2 [Jatropha curcas]
20 Hb_000087_070 0.103312741 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]

Gene co-expression network

sample Hb_001821_110 Hb_001821_110 Hb_004545_110 Hb_004545_110 Hb_001821_110--Hb_004545_110 Hb_000069_720 Hb_000069_720 Hb_001821_110--Hb_000069_720 Hb_000167_010 Hb_000167_010 Hb_001821_110--Hb_000167_010 Hb_002272_270 Hb_002272_270 Hb_001821_110--Hb_002272_270 Hb_000120_370 Hb_000120_370 Hb_001821_110--Hb_000120_370 Hb_005288_130 Hb_005288_130 Hb_001821_110--Hb_005288_130 Hb_000666_100 Hb_000666_100 Hb_004545_110--Hb_000666_100 Hb_000080_130 Hb_000080_130 Hb_004545_110--Hb_000080_130 Hb_008616_050 Hb_008616_050 Hb_004545_110--Hb_008616_050 Hb_133702_010 Hb_133702_010 Hb_004545_110--Hb_133702_010 Hb_000347_240 Hb_000347_240 Hb_004545_110--Hb_000347_240 Hb_005800_030 Hb_005800_030 Hb_004545_110--Hb_005800_030 Hb_001301_110 Hb_001301_110 Hb_000069_720--Hb_001301_110 Hb_004157_050 Hb_004157_050 Hb_000069_720--Hb_004157_050 Hb_003878_090 Hb_003878_090 Hb_000069_720--Hb_003878_090 Hb_003678_020 Hb_003678_020 Hb_000069_720--Hb_003678_020 Hb_000069_720--Hb_000167_010 Hb_000840_200 Hb_000840_200 Hb_000069_720--Hb_000840_200 Hb_003058_120 Hb_003058_120 Hb_000167_010--Hb_003058_120 Hb_002439_010 Hb_002439_010 Hb_000167_010--Hb_002439_010 Hb_003883_060 Hb_003883_060 Hb_000167_010--Hb_003883_060 Hb_001301_150 Hb_001301_150 Hb_000167_010--Hb_001301_150 Hb_023001_040 Hb_023001_040 Hb_000167_010--Hb_023001_040 Hb_002272_270--Hb_000840_200 Hb_000179_270 Hb_000179_270 Hb_002272_270--Hb_000179_270 Hb_000087_070 Hb_000087_070 Hb_002272_270--Hb_000087_070 Hb_015675_040 Hb_015675_040 Hb_002272_270--Hb_015675_040 Hb_002272_270--Hb_005288_130 Hb_157023_020 Hb_157023_020 Hb_002272_270--Hb_157023_020 Hb_000115_150 Hb_000115_150 Hb_000120_370--Hb_000115_150 Hb_005725_130 Hb_005725_130 Hb_000120_370--Hb_005725_130 Hb_001828_180 Hb_001828_180 Hb_000120_370--Hb_001828_180 Hb_002301_100 Hb_002301_100 Hb_000120_370--Hb_002301_100 Hb_000120_370--Hb_000167_010 Hb_005648_010 Hb_005648_010 Hb_000120_370--Hb_005648_010 Hb_000398_060 Hb_000398_060 Hb_005288_130--Hb_000398_060 Hb_000116_490 Hb_000116_490 Hb_005288_130--Hb_000116_490 Hb_163175_010 Hb_163175_010 Hb_005288_130--Hb_163175_010 Hb_005288_130--Hb_000840_200 Hb_065525_080 Hb_065525_080 Hb_005288_130--Hb_065525_080 Hb_000663_060 Hb_000663_060 Hb_005288_130--Hb_000663_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2851 28.7218 60.8304 72.3 38.3406 32.9746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.4041 53.3413 25.7029 54.5632 51.645

CAGE analysis