Hb_001821_120

Information

Type -
Description -
Location Contig1821: 144008-147482
Sequence    

Annotation

kegg
ID vvi:100245960
description uncharacterized LOC100245960
nr
ID XP_012084588.1
description PREDICTED: uncharacterized protein LOC105643956 [Jatropha curcas]
swissprot
ID A0KF23
description 50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240) GN=rplW PE=3 SV=1
trembl
ID A0A067JTR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20175 PE=4 SV=1
Gene Ontology
ID GO:0016020
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17734: 144018-145805
cDNA
(Sanger)
(ID:Location)		 044_H13.ab1: 144018-145803

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001821_120 0.0 - - PREDICTED: uncharacterized protein LOC105643956 [Jatropha curcas]
2 Hb_003029_080 0.1153944899 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
3 Hb_002234_210 0.1274687144 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
4 Hb_000190_060 0.1277860969 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
5 Hb_002293_030 0.1309636793 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
6 Hb_007441_180 0.1400860032 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011310_060 0.1404973422 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
8 Hb_151930_020 0.1406353078 - - Wound-induced protein WIN1 precursor, putative [Ricinus communis]
9 Hb_004899_220 0.1408507611 - - PREDICTED: adrenodoxin-like protein 2, mitochondrial [Jatropha curcas]
10 Hb_003058_070 0.1463554906 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
11 Hb_000483_160 0.1464771389 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
12 Hb_001104_120 0.1484231445 - - -
13 Hb_001616_020 0.1489330065 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
14 Hb_000563_590 0.1504834317 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
15 Hb_073973_110 0.1514690662 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
16 Hb_052135_030 0.1518388316 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
17 Hb_001454_330 0.1528227007 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
18 Hb_000366_100 0.1539019435 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
19 Hb_003001_060 0.1555998017 - - wound-responsive family protein [Populus trichocarpa]
20 Hb_001623_330 0.1581401688 - - PREDICTED: uncharacterized protein LOC105638463 [Jatropha curcas]

Gene co-expression network

sample Hb_001821_120 Hb_001821_120 Hb_003029_080 Hb_003029_080 Hb_001821_120--Hb_003029_080 Hb_002234_210 Hb_002234_210 Hb_001821_120--Hb_002234_210 Hb_000190_060 Hb_000190_060 Hb_001821_120--Hb_000190_060 Hb_002293_030 Hb_002293_030 Hb_001821_120--Hb_002293_030 Hb_007441_180 Hb_007441_180 Hb_001821_120--Hb_007441_180 Hb_011310_060 Hb_011310_060 Hb_001821_120--Hb_011310_060 Hb_002498_180 Hb_002498_180 Hb_003029_080--Hb_002498_180 Hb_001623_330 Hb_001623_330 Hb_003029_080--Hb_001623_330 Hb_003058_070 Hb_003058_070 Hb_003029_080--Hb_003058_070 Hb_000483_160 Hb_000483_160 Hb_003029_080--Hb_000483_160 Hb_003001_060 Hb_003001_060 Hb_003029_080--Hb_003001_060 Hb_004958_050 Hb_004958_050 Hb_002234_210--Hb_004958_050 Hb_000634_050 Hb_000634_050 Hb_002234_210--Hb_000634_050 Hb_002234_210--Hb_003058_070 Hb_000417_110 Hb_000417_110 Hb_002234_210--Hb_000417_110 Hb_002234_210--Hb_000190_060 Hb_009252_130 Hb_009252_130 Hb_002234_210--Hb_009252_130 Hb_001214_030 Hb_001214_030 Hb_000190_060--Hb_001214_030 Hb_000190_060--Hb_009252_130 Hb_000190_060--Hb_000417_110 Hb_000190_060--Hb_000483_160 Hb_000025_530 Hb_000025_530 Hb_000190_060--Hb_000025_530 Hb_000190_060--Hb_003058_070 Hb_002293_030--Hb_011310_060 Hb_017711_010 Hb_017711_010 Hb_002293_030--Hb_017711_010 Hb_008847_020 Hb_008847_020 Hb_002293_030--Hb_008847_020 Hb_002293_030--Hb_002234_210 Hb_000526_150 Hb_000526_150 Hb_002293_030--Hb_000526_150 Hb_002293_030--Hb_000634_050 Hb_001621_180 Hb_001621_180 Hb_007441_180--Hb_001621_180 Hb_001104_120 Hb_001104_120 Hb_007441_180--Hb_001104_120 Hb_000563_590 Hb_000563_590 Hb_007441_180--Hb_000563_590 Hb_007441_180--Hb_009252_130 Hb_007441_180--Hb_000190_060 Hb_007441_180--Hb_002234_210 Hb_000134_020 Hb_000134_020 Hb_011310_060--Hb_000134_020 Hb_011310_060--Hb_002234_210 Hb_171900_050 Hb_171900_050 Hb_011310_060--Hb_171900_050 Hb_011310_060--Hb_009252_130 Hb_011310_060--Hb_000190_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1349 1.95479 2.01574 0.858695 14.8574 16.1566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7016 36.8097 3.50895 3.33719 0.568757

CAGE analysis