Hb_001821_130

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1821: 152613-167826
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26900g
description POPTRDRAFT_549273; NBS-LRR resistance gene-like protein ARGH30
nr
ID KDP27350.1
description hypothetical protein JCGZ_20174 [Jatropha curcas]
swissprot
ID Q9LRR5
description Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1
trembl
ID A0A067K520
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20174 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17738: 154563-154724 , PASA_asmbl_17739: 155384-155687 , PASA_asmbl_17741: 157058-158060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001821_130 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
2 Hb_002960_080 0.0893636224 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
3 Hb_006117_080 0.0938593731 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
4 Hb_000321_150 0.0957004078 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
5 Hb_007575_080 0.0963158899 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
6 Hb_000661_130 0.0979427474 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
7 Hb_043362_010 0.0980467976 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
8 Hb_024185_010 0.1041578534 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
9 Hb_001054_030 0.1048936351 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
10 Hb_008053_040 0.1065909307 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
11 Hb_001104_190 0.1087298445 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
12 Hb_000260_640 0.108905472 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
13 Hb_014834_060 0.1092064276 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
14 Hb_000069_470 0.1108444584 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
15 Hb_003581_170 0.1142486187 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
16 Hb_079326_020 0.1164936283 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011242_060 0.1167491064 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
18 Hb_002253_080 0.1169520157 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
19 Hb_010712_040 0.1177899277 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Jatropha curcas]
20 Hb_000579_010 0.1179283687 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]

Gene co-expression network

sample Hb_001821_130 Hb_001821_130 Hb_002960_080 Hb_002960_080 Hb_001821_130--Hb_002960_080 Hb_006117_080 Hb_006117_080 Hb_001821_130--Hb_006117_080 Hb_000321_150 Hb_000321_150 Hb_001821_130--Hb_000321_150 Hb_007575_080 Hb_007575_080 Hb_001821_130--Hb_007575_080 Hb_000661_130 Hb_000661_130 Hb_001821_130--Hb_000661_130 Hb_043362_010 Hb_043362_010 Hb_001821_130--Hb_043362_010 Hb_002960_080--Hb_043362_010 Hb_079326_020 Hb_079326_020 Hb_002960_080--Hb_079326_020 Hb_011849_040 Hb_011849_040 Hb_002960_080--Hb_011849_040 Hb_000069_470 Hb_000069_470 Hb_002960_080--Hb_000069_470 Hb_001188_020 Hb_001188_020 Hb_002960_080--Hb_001188_020 Hb_003581_170 Hb_003581_170 Hb_002960_080--Hb_003581_170 Hb_001104_190 Hb_001104_190 Hb_006117_080--Hb_001104_190 Hb_006117_080--Hb_000069_470 Hb_009150_020 Hb_009150_020 Hb_006117_080--Hb_009150_020 Hb_006117_080--Hb_000321_150 Hb_024185_010 Hb_024185_010 Hb_006117_080--Hb_024185_010 Hb_000260_640 Hb_000260_640 Hb_006117_080--Hb_000260_640 Hb_003729_030 Hb_003729_030 Hb_000321_150--Hb_003729_030 Hb_000321_150--Hb_000069_470 Hb_000321_150--Hb_000661_130 Hb_009767_080 Hb_009767_080 Hb_000321_150--Hb_009767_080 Hb_000977_120 Hb_000977_120 Hb_000321_150--Hb_000977_120 Hb_008053_040 Hb_008053_040 Hb_007575_080--Hb_008053_040 Hb_007575_080--Hb_024185_010 Hb_007575_080--Hb_006117_080 Hb_007575_080--Hb_000321_150 Hb_007575_080--Hb_000661_130 Hb_002780_010 Hb_002780_010 Hb_007575_080--Hb_002780_010 Hb_019430_020 Hb_019430_020 Hb_000661_130--Hb_019430_020 Hb_000661_130--Hb_006117_080 Hb_000661_130--Hb_000069_470 Hb_010712_040 Hb_010712_040 Hb_000661_130--Hb_010712_040 Hb_004483_040 Hb_004483_040 Hb_000661_130--Hb_004483_040 Hb_043362_010--Hb_001188_020 Hb_002007_110 Hb_002007_110 Hb_043362_010--Hb_002007_110 Hb_003912_070 Hb_003912_070 Hb_043362_010--Hb_003912_070 Hb_043362_010--Hb_003581_170 Hb_003805_040 Hb_003805_040 Hb_043362_010--Hb_003805_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.247357 1.36738 0.440345 0.406668 0.563366 0.874225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.425326 0.350678 0.481765 0.437052 0.755164

CAGE analysis