Hb_001823_090

Information

Type -
Description -
Location Contig1823: 72766-73674
Sequence    

Annotation

kegg
ID rcu:RCOM_1180700
description hypothetical protein
nr
ID XP_002533604.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T5T5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1180700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001823_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000735_060 0.1162735232 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
3 Hb_001597_030 0.1167634334 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]
4 Hb_003606_050 0.1190496292 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
5 Hb_003540_120 0.1198610022 - - calmodulin binding protein, putative [Ricinus communis]
6 Hb_001863_010 0.1409240354 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
7 Hb_000834_220 0.1433098253 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
8 Hb_002045_010 0.1433983134 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
9 Hb_001195_550 0.1449900254 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
10 Hb_003935_040 0.1455543549 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
11 Hb_005568_020 0.1474965707 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
12 Hb_002805_180 0.1475929799 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000320_310 0.1480767215 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
14 Hb_000638_240 0.1496875727 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Prunus mume]
15 Hb_005144_060 0.151352447 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
16 Hb_001524_120 0.1516305575 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
17 Hb_024682_030 0.1521569801 - - PREDICTED: DNA replication licensing factor MCM2 [Jatropha curcas]
18 Hb_000431_100 0.1523197375 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
19 Hb_001936_180 0.1532905595 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
20 Hb_129996_010 0.1534176859 - - hypothetical protein PRUPE_ppa013547mg [Prunus persica]

Gene co-expression network

sample Hb_001823_090 Hb_001823_090 Hb_000735_060 Hb_000735_060 Hb_001823_090--Hb_000735_060 Hb_001597_030 Hb_001597_030 Hb_001823_090--Hb_001597_030 Hb_003606_050 Hb_003606_050 Hb_001823_090--Hb_003606_050 Hb_003540_120 Hb_003540_120 Hb_001823_090--Hb_003540_120 Hb_001863_010 Hb_001863_010 Hb_001823_090--Hb_001863_010 Hb_000834_220 Hb_000834_220 Hb_001823_090--Hb_000834_220 Hb_005568_020 Hb_005568_020 Hb_000735_060--Hb_005568_020 Hb_000735_060--Hb_003606_050 Hb_022092_110 Hb_022092_110 Hb_000735_060--Hb_022092_110 Hb_001936_180 Hb_001936_180 Hb_000735_060--Hb_001936_180 Hb_000418_170 Hb_000418_170 Hb_000735_060--Hb_000418_170 Hb_000008_200 Hb_000008_200 Hb_000735_060--Hb_000008_200 Hb_001597_030--Hb_000834_220 Hb_001157_190 Hb_001157_190 Hb_001597_030--Hb_001157_190 Hb_000011_370 Hb_000011_370 Hb_001597_030--Hb_000011_370 Hb_000749_120 Hb_000749_120 Hb_001597_030--Hb_000749_120 Hb_001597_030--Hb_003540_120 Hb_001138_070 Hb_001138_070 Hb_001597_030--Hb_001138_070 Hb_003606_050--Hb_005568_020 Hb_003606_050--Hb_000008_200 Hb_001085_190 Hb_001085_190 Hb_003606_050--Hb_001085_190 Hb_001188_050 Hb_001188_050 Hb_003606_050--Hb_001188_050 Hb_003606_050--Hb_001936_180 Hb_030685_010 Hb_030685_010 Hb_003540_120--Hb_030685_010 Hb_003540_120--Hb_003606_050 Hb_003540_120--Hb_001188_050 Hb_002681_120 Hb_002681_120 Hb_003540_120--Hb_002681_120 Hb_116647_010 Hb_116647_010 Hb_001863_010--Hb_116647_010 Hb_001524_120 Hb_001524_120 Hb_001863_010--Hb_001524_120 Hb_000260_380 Hb_000260_380 Hb_001863_010--Hb_000260_380 Hb_003228_050 Hb_003228_050 Hb_001863_010--Hb_003228_050 Hb_000431_100 Hb_000431_100 Hb_001863_010--Hb_000431_100 Hb_003050_020 Hb_003050_020 Hb_001863_010--Hb_003050_020 Hb_001440_010 Hb_001440_010 Hb_000834_220--Hb_001440_010 Hb_005144_060 Hb_005144_060 Hb_000834_220--Hb_005144_060 Hb_002918_120 Hb_002918_120 Hb_000834_220--Hb_002918_120 Hb_003656_090 Hb_003656_090 Hb_000834_220--Hb_003656_090 Hb_000834_220--Hb_001936_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.14946 0.684072 4.42948 5.10485 0.0233551 0.195341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0571537 0.314628 0 1.63083 1.643

CAGE analysis