Hb_001824_030

Information

Type -
Description -
Location Contig1824: 29221-35139
Sequence    

Annotation

kegg
ID rcu:RCOM_1612150
description plant sec1, putative
nr
ID XP_002511719.1
description plant sec1, putative [Ricinus communis]
swissprot
ID Q9C5P7
description Protein transport Sec1a OS=Arabidopsis thaliana GN=SEC1A PE=2 SV=3
trembl
ID B9RDD0
description Plant sec1, putative OS=Ricinus communis GN=RCOM_1612150 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein transport sec1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17779: 28916-29464 , PASA_asmbl_17780: 29571-30143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001824_030 0.0 - - plant sec1, putative [Ricinus communis]
2 Hb_000940_050 0.0762185892 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
3 Hb_016448_010 0.0820234813 - - Protein MYG1, putative [Ricinus communis]
4 Hb_003506_030 0.0837837533 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
5 Hb_002045_170 0.0920102005 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
6 Hb_011716_010 0.0931786237 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
7 Hb_003449_100 0.0968444455 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
8 Hb_032823_020 0.0981302156 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003470_040 0.0985732868 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
10 Hb_000958_080 0.0985915332 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001504_010 0.099038589 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
12 Hb_029695_080 0.100059608 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
13 Hb_004724_390 0.100816174 - - PREDICTED: nicalin-1-like [Populus euphratica]
14 Hb_000327_330 0.1040772225 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004531_150 0.105309921 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
16 Hb_004712_190 0.106451403 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
17 Hb_005649_100 0.106768595 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
18 Hb_004096_160 0.1069592366 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
19 Hb_021596_020 0.1088494086 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
20 Hb_000703_160 0.1089676836 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001824_030 Hb_001824_030 Hb_000940_050 Hb_000940_050 Hb_001824_030--Hb_000940_050 Hb_016448_010 Hb_016448_010 Hb_001824_030--Hb_016448_010 Hb_003506_030 Hb_003506_030 Hb_001824_030--Hb_003506_030 Hb_002045_170 Hb_002045_170 Hb_001824_030--Hb_002045_170 Hb_011716_010 Hb_011716_010 Hb_001824_030--Hb_011716_010 Hb_003449_100 Hb_003449_100 Hb_001824_030--Hb_003449_100 Hb_005649_100 Hb_005649_100 Hb_000940_050--Hb_005649_100 Hb_000139_220 Hb_000139_220 Hb_000940_050--Hb_000139_220 Hb_000940_050--Hb_016448_010 Hb_009659_030 Hb_009659_030 Hb_000940_050--Hb_009659_030 Hb_004096_160 Hb_004096_160 Hb_000940_050--Hb_004096_160 Hb_016448_010--Hb_003506_030 Hb_021596_020 Hb_021596_020 Hb_016448_010--Hb_021596_020 Hb_012438_030 Hb_012438_030 Hb_016448_010--Hb_012438_030 Hb_001504_010 Hb_001504_010 Hb_016448_010--Hb_001504_010 Hb_000098_240 Hb_000098_240 Hb_016448_010--Hb_000098_240 Hb_026234_010 Hb_026234_010 Hb_016448_010--Hb_026234_010 Hb_000089_210 Hb_000089_210 Hb_003506_030--Hb_000089_210 Hb_029695_080 Hb_029695_080 Hb_003506_030--Hb_029695_080 Hb_087313_010 Hb_087313_010 Hb_003506_030--Hb_087313_010 Hb_004531_150 Hb_004531_150 Hb_003506_030--Hb_004531_150 Hb_000958_080 Hb_000958_080 Hb_003506_030--Hb_000958_080 Hb_004724_390 Hb_004724_390 Hb_002045_170--Hb_004724_390 Hb_000954_010 Hb_000954_010 Hb_002045_170--Hb_000954_010 Hb_001250_050 Hb_001250_050 Hb_002045_170--Hb_001250_050 Hb_002687_180 Hb_002687_180 Hb_002045_170--Hb_002687_180 Hb_001246_130 Hb_001246_130 Hb_002045_170--Hb_001246_130 Hb_000317_110 Hb_000317_110 Hb_002045_170--Hb_000317_110 Hb_001279_190 Hb_001279_190 Hb_011716_010--Hb_001279_190 Hb_011716_010--Hb_002687_180 Hb_007483_070 Hb_007483_070 Hb_011716_010--Hb_007483_070 Hb_011716_010--Hb_001504_010 Hb_006438_020 Hb_006438_020 Hb_011716_010--Hb_006438_020 Hb_004228_120 Hb_004228_120 Hb_011716_010--Hb_004228_120 Hb_000703_160 Hb_000703_160 Hb_003449_100--Hb_000703_160 Hb_007919_110 Hb_007919_110 Hb_003449_100--Hb_007919_110 Hb_002249_020 Hb_002249_020 Hb_003449_100--Hb_002249_020 Hb_002304_050 Hb_002304_050 Hb_003449_100--Hb_002304_050 Hb_000753_160 Hb_000753_160 Hb_003449_100--Hb_000753_160 Hb_003449_100--Hb_000958_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.23384 2.9153 6.72258 3.9923 1.93174 1.69294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.871947 1.82948 0.721483 3.01186 2.81376

CAGE analysis