Hb_001824_070

Information

Type -
Description -
Location Contig1824: 62218-64954
Sequence    

Annotation

kegg
ID rcu:RCOM_1619060
description H/ACA ribonucleoprotein complex subunit, putative
nr
ID XP_002512015.1
description H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
swissprot
ID Q9LEY9
description H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1
trembl
ID B9RE76
description H/ACA ribonucleoprotein complex subunit, putative OS=Ricinus communis GN=RCOM_1619060 PE=4 SV=1
Gene Ontology
ID GO:0005730
description h aca ribonucleoprotein complex subunit 2-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17781: 62234-64855
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001824_070 0.0 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
2 Hb_001477_110 0.0503476789 - - prohibitin, putative [Ricinus communis]
3 Hb_009711_030 0.0571423868 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
4 Hb_001584_070 0.0585466643 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003878_190 0.0596309183 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
6 Hb_000371_080 0.061382666 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
7 Hb_000465_060 0.0623687491 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
8 Hb_002097_110 0.0634006638 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_005997_010 0.0648597847 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
10 Hb_000318_380 0.0663059525 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
11 Hb_000928_240 0.0668236989 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
12 Hb_023732_070 0.0680536942 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
13 Hb_000580_080 0.0699910759 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
14 Hb_003020_230 0.0713754579 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
15 Hb_002893_060 0.0747289279 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
16 Hb_000007_100 0.0749692017 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
17 Hb_002311_350 0.0752053973 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
18 Hb_000832_140 0.0775649725 - - actin depolymerizing factor 4 [Hevea brasiliensis]
19 Hb_004662_030 0.0781960741 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
20 Hb_001818_020 0.0790529461 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]

Gene co-expression network

sample Hb_001824_070 Hb_001824_070 Hb_001477_110 Hb_001477_110 Hb_001824_070--Hb_001477_110 Hb_009711_030 Hb_009711_030 Hb_001824_070--Hb_009711_030 Hb_001584_070 Hb_001584_070 Hb_001824_070--Hb_001584_070 Hb_003878_190 Hb_003878_190 Hb_001824_070--Hb_003878_190 Hb_000371_080 Hb_000371_080 Hb_001824_070--Hb_000371_080 Hb_000465_060 Hb_000465_060 Hb_001824_070--Hb_000465_060 Hb_000380_190 Hb_000380_190 Hb_001477_110--Hb_000380_190 Hb_002311_350 Hb_002311_350 Hb_001477_110--Hb_002311_350 Hb_001235_210 Hb_001235_210 Hb_001477_110--Hb_001235_210 Hb_000832_140 Hb_000832_140 Hb_001477_110--Hb_000832_140 Hb_000007_100 Hb_000007_100 Hb_001477_110--Hb_000007_100 Hb_022250_040 Hb_022250_040 Hb_009711_030--Hb_022250_040 Hb_125000_010 Hb_125000_010 Hb_009711_030--Hb_125000_010 Hb_009711_030--Hb_000371_080 Hb_001008_060 Hb_001008_060 Hb_009711_030--Hb_001008_060 Hb_002097_110 Hb_002097_110 Hb_009711_030--Hb_002097_110 Hb_001584_070--Hb_000465_060 Hb_000365_380 Hb_000365_380 Hb_001584_070--Hb_000365_380 Hb_012515_010 Hb_012515_010 Hb_001584_070--Hb_012515_010 Hb_000417_110 Hb_000417_110 Hb_001584_070--Hb_000417_110 Hb_001383_060 Hb_001383_060 Hb_001584_070--Hb_001383_060 Hb_003001_060 Hb_003001_060 Hb_003878_190--Hb_003001_060 Hb_000392_270 Hb_000392_270 Hb_003878_190--Hb_000392_270 Hb_000928_240 Hb_000928_240 Hb_003878_190--Hb_000928_240 Hb_003878_190--Hb_009711_030 Hb_000977_080 Hb_000977_080 Hb_003878_190--Hb_000977_080 Hb_005686_110 Hb_005686_110 Hb_000371_080--Hb_005686_110 Hb_000371_080--Hb_022250_040 Hb_003020_230 Hb_003020_230 Hb_000371_080--Hb_003020_230 Hb_005997_010 Hb_005997_010 Hb_000371_080--Hb_005997_010 Hb_000465_060--Hb_012515_010 Hb_023732_070 Hb_023732_070 Hb_000465_060--Hb_023732_070 Hb_143629_230 Hb_143629_230 Hb_000465_060--Hb_143629_230 Hb_002893_060 Hb_002893_060 Hb_000465_060--Hb_002893_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.3371 20.5215 16.643 24.7893 70.1082 83.9084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
101.051 129.954 58.65 45.7461 15.4845

CAGE analysis