Hb_001824_090

Information

Type -
Description -
Location Contig1824: 104093-104808
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17782: 89235-104830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001824_090 0.0 - - -
2 Hb_003994_110 0.0835064126 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646130 [Jatropha curcas]
3 Hb_000613_110 0.0910068312 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
4 Hb_007101_080 0.0968280548 transcription factor TF Family: GNAT GCN5-related N-acetyltransferase family protein [Populus trichocarpa]
5 Hb_002078_340 0.0990975567 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
6 Hb_003376_230 0.1008923709 - - PREDICTED: dnaJ protein P58IPK homolog [Jatropha curcas]
7 Hb_000077_150 0.101696794 - - PREDICTED: riboflavin synthase [Jatropha curcas]
8 Hb_003544_010 0.1033573692 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_002811_010 0.1066081228 - - cysteine synthase, putative [Ricinus communis]
10 Hb_000025_270 0.1155897977 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
11 Hb_011512_110 0.1171686959 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_003106_190 0.1171709549 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
13 Hb_005731_160 0.1197798625 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_005282_020 0.1201915158 - - hypothetical protein PRUPE_ppa019056mg, partial [Prunus persica]
15 Hb_000172_580 0.1217467468 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000010_290 0.1217554494 - - -
17 Hb_000462_090 0.1235916926 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]
18 Hb_003020_260 0.1245333588 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
19 Hb_032920_050 0.1261877183 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
20 Hb_036790_080 0.1264145508 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]

Gene co-expression network

sample Hb_001824_090 Hb_001824_090 Hb_003994_110 Hb_003994_110 Hb_001824_090--Hb_003994_110 Hb_000613_110 Hb_000613_110 Hb_001824_090--Hb_000613_110 Hb_007101_080 Hb_007101_080 Hb_001824_090--Hb_007101_080 Hb_002078_340 Hb_002078_340 Hb_001824_090--Hb_002078_340 Hb_003376_230 Hb_003376_230 Hb_001824_090--Hb_003376_230 Hb_000077_150 Hb_000077_150 Hb_001824_090--Hb_000077_150 Hb_003544_010 Hb_003544_010 Hb_003994_110--Hb_003544_010 Hb_003475_020 Hb_003475_020 Hb_003994_110--Hb_003475_020 Hb_003994_110--Hb_000613_110 Hb_032920_050 Hb_032920_050 Hb_003994_110--Hb_032920_050 Hb_003106_190 Hb_003106_190 Hb_003994_110--Hb_003106_190 Hb_005731_160 Hb_005731_160 Hb_000613_110--Hb_005731_160 Hb_002811_010 Hb_002811_010 Hb_000613_110--Hb_002811_010 Hb_000613_110--Hb_032920_050 Hb_001449_070 Hb_001449_070 Hb_000613_110--Hb_001449_070 Hb_000613_110--Hb_003106_190 Hb_000025_270 Hb_000025_270 Hb_007101_080--Hb_000025_270 Hb_007101_080--Hb_032920_050 Hb_007101_080--Hb_000613_110 Hb_004218_190 Hb_004218_190 Hb_007101_080--Hb_004218_190 Hb_007101_080--Hb_003994_110 Hb_000046_540 Hb_000046_540 Hb_002078_340--Hb_000046_540 Hb_000482_040 Hb_000482_040 Hb_002078_340--Hb_000482_040 Hb_012150_030 Hb_012150_030 Hb_002078_340--Hb_012150_030 Hb_003153_010 Hb_003153_010 Hb_002078_340--Hb_003153_010 Hb_002078_340--Hb_003376_230 Hb_000364_050 Hb_000364_050 Hb_002078_340--Hb_000364_050 Hb_000212_440 Hb_000212_440 Hb_003376_230--Hb_000212_440 Hb_011512_110 Hb_011512_110 Hb_003376_230--Hb_011512_110 Hb_003376_230--Hb_003153_010 Hb_000172_580 Hb_000172_580 Hb_003376_230--Hb_000172_580 Hb_001584_200 Hb_001584_200 Hb_003376_230--Hb_001584_200 Hb_005405_020 Hb_005405_020 Hb_003376_230--Hb_005405_020 Hb_004644_030 Hb_004644_030 Hb_000077_150--Hb_004644_030 Hb_002762_110 Hb_002762_110 Hb_000077_150--Hb_002762_110 Hb_001214_050 Hb_001214_050 Hb_000077_150--Hb_001214_050 Hb_000077_150--Hb_003106_190 Hb_000077_150--Hb_002078_340 Hb_000077_150--Hb_002811_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.44299 2.31325 7.8451 6.88172 6.74073 6.72506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.55527 9.59164 8.59682 10.9427 23.5874

CAGE analysis