Hb_001825_010

Information

Type -
Description -
Location Contig1825: 209-11698
Sequence    

Annotation

kegg
ID tcc:TCM_004126
description BET1P/SFT1P-like protein 14A isoform 1
nr
ID XP_012092079.1
description PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
swissprot
ID Q9M2J9
description Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET11 PE=1 SV=1
trembl
ID A0A067JC10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21803 PE=4 SV=1
Gene Ontology
ID GO:0005515
description bet1-like snare 1-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17784: 7274-11743 , PASA_asmbl_17786: 7274-11704
cDNA
(Sanger)
(ID:Location)		 007_J11.ab1: 7275-11693 , 015_I15.ab1: 7274-11693 , 015_O24.ab1: 7274-11693 , 021_D04.ab1: 7274-11704 , 021_F02.ab1: 7281-11491 , 024_I11.ab1: 7274-11720 , 026_G15.ab1: 7278-11552 , 028_I08.ab1: 7275-11682 , 032_L13.ab1: 7275-11693 , 037_P07.ab1: 7274-11655 , 042_D22.ab1: 7275-11693 , 042_F21.ab1: 7275-11693 , 045_O13.ab1: 7276-11598 , 045_P23.ab1: 7274-11655 , 048_D06.ab1: 7274-11693 , 049_P11.ab1: 7274-11695 , 051_H09.ab1: 7275-11693 , 052_L21.ab1: 7275-11682

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001825_010 0.0 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
2 Hb_012977_010 0.0981316571 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
3 Hb_000365_350 0.0988354833 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
4 Hb_001523_010 0.1045031945 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]
5 Hb_002149_040 0.1068661128 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000416_100 0.1074849305 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
7 Hb_000363_340 0.1076851882 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
8 Hb_000088_180 0.1077049241 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
9 Hb_000172_530 0.1091255438 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
10 Hb_001776_080 0.1106726909 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
11 Hb_005016_030 0.1115855324 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
12 Hb_000176_140 0.1118004726 - - PREDICTED: bystin [Jatropha curcas]
13 Hb_005754_020 0.1122836872 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
14 Hb_000732_020 0.1125765047 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
15 Hb_006478_070 0.11582408 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
16 Hb_000270_450 0.116335848 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
17 Hb_001178_060 0.1173204901 - - PREDICTED: protein BUD31 homolog 2 isoform X1 [Jatropha curcas]
18 Hb_007786_010 0.117400722 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
19 Hb_011930_010 0.1176859991 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
20 Hb_011609_030 0.1201600549 - - conserved hypothetical protein 13 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001825_010 Hb_001825_010 Hb_012977_010 Hb_012977_010 Hb_001825_010--Hb_012977_010 Hb_000365_350 Hb_000365_350 Hb_001825_010--Hb_000365_350 Hb_001523_010 Hb_001523_010 Hb_001825_010--Hb_001523_010 Hb_002149_040 Hb_002149_040 Hb_001825_010--Hb_002149_040 Hb_000416_100 Hb_000416_100 Hb_001825_010--Hb_000416_100 Hb_000363_340 Hb_000363_340 Hb_001825_010--Hb_000363_340 Hb_005725_070 Hb_005725_070 Hb_012977_010--Hb_005725_070 Hb_000347_080 Hb_000347_080 Hb_012977_010--Hb_000347_080 Hb_001969_040 Hb_001969_040 Hb_012977_010--Hb_001969_040 Hb_007786_010 Hb_007786_010 Hb_012977_010--Hb_007786_010 Hb_012977_010--Hb_000363_340 Hb_000165_130 Hb_000165_130 Hb_012977_010--Hb_000165_130 Hb_012807_120 Hb_012807_120 Hb_000365_350--Hb_012807_120 Hb_000050_120 Hb_000050_120 Hb_000365_350--Hb_000050_120 Hb_000088_180 Hb_000088_180 Hb_000365_350--Hb_000088_180 Hb_004032_460 Hb_004032_460 Hb_000365_350--Hb_004032_460 Hb_098315_100 Hb_098315_100 Hb_000365_350--Hb_098315_100 Hb_006478_070 Hb_006478_070 Hb_000365_350--Hb_006478_070 Hb_000466_060 Hb_000466_060 Hb_001523_010--Hb_000466_060 Hb_000172_530 Hb_000172_530 Hb_001523_010--Hb_000172_530 Hb_113216_010 Hb_113216_010 Hb_001523_010--Hb_113216_010 Hb_005016_030 Hb_005016_030 Hb_001523_010--Hb_005016_030 Hb_000270_450 Hb_000270_450 Hb_001523_010--Hb_000270_450 Hb_002149_040--Hb_005016_030 Hb_002405_020 Hb_002405_020 Hb_002149_040--Hb_002405_020 Hb_001776_080 Hb_001776_080 Hb_002149_040--Hb_001776_080 Hb_001016_060 Hb_001016_060 Hb_002149_040--Hb_001016_060 Hb_000926_270 Hb_000926_270 Hb_002149_040--Hb_000926_270 Hb_006173_020 Hb_006173_020 Hb_002149_040--Hb_006173_020 Hb_002388_060 Hb_002388_060 Hb_000416_100--Hb_002388_060 Hb_007545_210 Hb_007545_210 Hb_000416_100--Hb_007545_210 Hb_000714_020 Hb_000714_020 Hb_000416_100--Hb_000714_020 Hb_004738_090 Hb_004738_090 Hb_000416_100--Hb_004738_090 Hb_000416_100--Hb_000365_350 Hb_000392_280 Hb_000392_280 Hb_000363_340--Hb_000392_280 Hb_000363_340--Hb_001016_060 Hb_000363_340--Hb_005725_070 Hb_001498_030 Hb_001498_030 Hb_000363_340--Hb_001498_030 Hb_000300_540 Hb_000300_540 Hb_000363_340--Hb_000300_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2233.24 388.024 85.2306 360.23 1533.19 1992.69
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
775.038 590.919 705.353 167.634 55.139

CAGE analysis