Hb_001825_030

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1825: 25854-27818
Sequence    

Annotation

kegg
ID rcu:RCOM_0993100
description Transcriptional regulator SUPERMAN, putative
nr
ID XP_012092080.1
description PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
swissprot
ID Q38895
description Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP PE=1 SV=1
trembl
ID A0A067JP76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21805 PE=4 SV=1
Gene Ontology
ID GO:0003676
description transcriptional regulator superman-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001825_030 0.0 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
2 Hb_000284_090 0.0006416752 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
3 Hb_001147_120 0.0039721377 - - hypothetical protein JCGZ_14802 [Jatropha curcas]
4 Hb_012760_080 0.0236301233 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000321_020 0.0242653095 - - PREDICTED: uncharacterized protein LOC104891638 [Beta vulgaris subsp. vulgaris]
6 Hb_002304_120 0.0303877965 - - conserved hypothetical protein [Ricinus communis]
7 Hb_058095_010 0.0362607405 - - PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
8 Hb_000327_050 0.0377285955 - - PREDICTED: protein NRT1/ PTR FAMILY 2.7-like isoform X1 [Populus euphratica]
9 Hb_013399_040 0.0442626824 - - hypothetical protein JCGZ_24713 [Jatropha curcas]
10 Hb_004148_030 0.0512925736 - - PREDICTED: protein RAFTIN 1B-like [Gossypium raimondii]
11 Hb_170674_020 0.0530047798 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
12 Hb_000318_070 0.0587647144 - - PREDICTED: peroxidase 10-like [Jatropha curcas]
13 Hb_000099_180 0.0644987333 - - PREDICTED: uncharacterized protein LOC104744055 [Camelina sativa]
14 Hb_028390_020 0.0686373431 - - -
15 Hb_001998_160 0.075079623 - - PREDICTED: origin recognition complex subunit 1-like [Populus euphratica]
16 Hb_002217_480 0.0757662286 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
17 Hb_003059_060 0.0853224804 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
18 Hb_032280_010 0.0867847447 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
19 Hb_000061_080 0.0910709814 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
20 Hb_000056_180 0.0950958634 - - -

Gene co-expression network

sample Hb_001825_030 Hb_001825_030 Hb_000284_090 Hb_000284_090 Hb_001825_030--Hb_000284_090 Hb_001147_120 Hb_001147_120 Hb_001825_030--Hb_001147_120 Hb_012760_080 Hb_012760_080 Hb_001825_030--Hb_012760_080 Hb_000321_020 Hb_000321_020 Hb_001825_030--Hb_000321_020 Hb_002304_120 Hb_002304_120 Hb_001825_030--Hb_002304_120 Hb_058095_010 Hb_058095_010 Hb_001825_030--Hb_058095_010 Hb_000284_090--Hb_001147_120 Hb_000284_090--Hb_012760_080 Hb_000284_090--Hb_000321_020 Hb_000284_090--Hb_002304_120 Hb_000284_090--Hb_058095_010 Hb_001147_120--Hb_000321_020 Hb_001147_120--Hb_002304_120 Hb_001147_120--Hb_012760_080 Hb_000327_050 Hb_000327_050 Hb_001147_120--Hb_000327_050 Hb_012760_080--Hb_058095_010 Hb_000099_180 Hb_000099_180 Hb_012760_080--Hb_000099_180 Hb_028390_020 Hb_028390_020 Hb_012760_080--Hb_028390_020 Hb_000321_020--Hb_002304_120 Hb_000321_020--Hb_000327_050 Hb_013399_040 Hb_013399_040 Hb_000321_020--Hb_013399_040 Hb_002304_120--Hb_000327_050 Hb_002304_120--Hb_013399_040 Hb_170674_020 Hb_170674_020 Hb_002304_120--Hb_170674_020 Hb_000318_070 Hb_000318_070 Hb_002304_120--Hb_000318_070 Hb_058095_010--Hb_000099_180 Hb_058095_010--Hb_028390_020 Hb_058095_010--Hb_001147_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.252538 0 1.21923 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis