Hb_001825_060

Information

Type -
Description -
Location Contig1825: 63736-67555
Sequence    

Annotation

kegg
ID pop:POPTR_0002s04280g
description POPTRDRAFT_830083; kelch repeat-containing F-box family protein
nr
ID XP_012092081.1
description PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
swissprot
ID Q0V7S6
description F-box/kelch-repeat protein OR23 OS=Arabidopsis thaliana GN=OR23 PE=2 SV=1
trembl
ID A0A067JBX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21807 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box kelch-repeat protein or23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17790: 63603-67027
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001825_060 0.0 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
2 Hb_001856_200 0.0948786995 - - Esterase PIR7B, putative [Ricinus communis]
3 Hb_002217_020 0.1001306941 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
4 Hb_012573_040 0.1001900372 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
5 Hb_012107_060 0.106763727 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
6 Hb_141990_040 0.1130988607 - - Protein SCAR2, putative [Ricinus communis]
7 Hb_000465_230 0.1138293221 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
8 Hb_000465_300 0.1162514657 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
9 Hb_000987_060 0.1197362466 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
10 Hb_000448_050 0.1217410057 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
11 Hb_000363_210 0.1218483383 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
12 Hb_001648_030 0.1233154497 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
13 Hb_000398_100 0.1246854625 - - Uncharacterized protein isoform 2 [Theobroma cacao]
14 Hb_001473_040 0.1263130655 - - serine/threonine protein kinase, putative [Ricinus communis]
15 Hb_000173_470 0.1289364392 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
16 Hb_001635_190 0.129798643 - - RNA m5u methyltransferase, putative [Ricinus communis]
17 Hb_004324_090 0.1299510423 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
18 Hb_003929_130 0.129992506 - - PREDICTED: uncharacterized protein LOC105643628 [Jatropha curcas]
19 Hb_001189_140 0.1300268564 - - -
20 Hb_034688_020 0.1313310522 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]

Gene co-expression network

sample Hb_001825_060 Hb_001825_060 Hb_001856_200 Hb_001856_200 Hb_001825_060--Hb_001856_200 Hb_002217_020 Hb_002217_020 Hb_001825_060--Hb_002217_020 Hb_012573_040 Hb_012573_040 Hb_001825_060--Hb_012573_040 Hb_012107_060 Hb_012107_060 Hb_001825_060--Hb_012107_060 Hb_141990_040 Hb_141990_040 Hb_001825_060--Hb_141990_040 Hb_000465_230 Hb_000465_230 Hb_001825_060--Hb_000465_230 Hb_001856_200--Hb_002217_020 Hb_000987_060 Hb_000987_060 Hb_001856_200--Hb_000987_060 Hb_000210_010 Hb_000210_010 Hb_001856_200--Hb_000210_010 Hb_001856_200--Hb_141990_040 Hb_000009_450 Hb_000009_450 Hb_001856_200--Hb_000009_450 Hb_022250_060 Hb_022250_060 Hb_002217_020--Hb_022250_060 Hb_007317_010 Hb_007317_010 Hb_002217_020--Hb_007317_010 Hb_003657_010 Hb_003657_010 Hb_002217_020--Hb_003657_010 Hb_136509_010 Hb_136509_010 Hb_002217_020--Hb_136509_010 Hb_000164_020 Hb_000164_020 Hb_002217_020--Hb_000164_020 Hb_000398_100 Hb_000398_100 Hb_012573_040--Hb_000398_100 Hb_000173_470 Hb_000173_470 Hb_012573_040--Hb_000173_470 Hb_000951_130 Hb_000951_130 Hb_012573_040--Hb_000951_130 Hb_000270_120 Hb_000270_120 Hb_012573_040--Hb_000270_120 Hb_004916_010 Hb_004916_010 Hb_012573_040--Hb_004916_010 Hb_004324_090 Hb_004324_090 Hb_012107_060--Hb_004324_090 Hb_000069_420 Hb_000069_420 Hb_012107_060--Hb_000069_420 Hb_004994_140 Hb_004994_140 Hb_012107_060--Hb_004994_140 Hb_158445_010 Hb_158445_010 Hb_012107_060--Hb_158445_010 Hb_002878_020 Hb_002878_020 Hb_012107_060--Hb_002878_020 Hb_000250_060 Hb_000250_060 Hb_012107_060--Hb_000250_060 Hb_141990_040--Hb_000009_450 Hb_141990_040--Hb_012573_040 Hb_000304_030 Hb_000304_030 Hb_141990_040--Hb_000304_030 Hb_000549_040 Hb_000549_040 Hb_141990_040--Hb_000549_040 Hb_013399_050 Hb_013399_050 Hb_000465_230--Hb_013399_050 Hb_000465_230--Hb_002217_020 Hb_061195_020 Hb_061195_020 Hb_000465_230--Hb_061195_020 Hb_065525_090 Hb_065525_090 Hb_000465_230--Hb_065525_090 Hb_000465_230--Hb_012107_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.87855 30.7614 13.7804 10.0702 8.54745 5.56766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3995 24.7552 25.456 15.5076 10.4874

CAGE analysis