Hb_001828_080

Information

Type -
Description -
Location Contig1828: 79961-83049
Sequence    

Annotation

kegg
ID pop:POPTR_0001s36290g
description POPTRDRAFT_706905; glyceraldehyde 3-phosphate dehydrogenase family protein
nr
ID XP_002298594.1
description glyceraldehyde 3-phosphate dehydrogenase family protein [Populus trichocarpa]
swissprot
ID Q7FAH2
description Glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC2 PE=1 SV=1
trembl
ID B9GJB1
description Glyceraldehyde-3-phosphate dehydrogenase OS=Populus trichocarpa GN=POPTR_0001s36290g PE=3 SV=1
Gene Ontology
ID GO:0016620
description glyceraldehyde-3-phosphate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17807: 81519-83078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001828_080 0.0 - - glyceraldehyde 3-phosphate dehydrogenase family protein [Populus trichocarpa]
2 Hb_000331_440 0.1162562087 - - hypothetical protein POPTR_0015s10290g [Populus trichocarpa]
3 Hb_001439_170 0.1464144076 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
4 Hb_000012_130 0.1520517138 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
5 Hb_004738_010 0.1524353636 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
6 Hb_002119_120 0.156978995 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
7 Hb_000735_130 0.1580069579 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001863_480 0.1727633159 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
9 Hb_001711_030 0.1738057991 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
10 Hb_000575_020 0.177102672 - - PREDICTED: copper-transporting ATPase PAA1, chloroplastic [Jatropha curcas]
11 Hb_007140_020 0.178024264 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
12 Hb_015057_060 0.178167786 - - -
13 Hb_000935_030 0.1788978544 - - Squalene monooxygenase, putative [Ricinus communis]
14 Hb_000487_310 0.179241711 - - PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
15 Hb_071947_010 0.1803173828 - - -
16 Hb_000188_130 0.1829599043 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
17 Hb_000107_070 0.183212932 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
18 Hb_054865_130 0.1853092409 - - acyltransferase, putative [Ricinus communis]
19 Hb_003581_090 0.1869908711 - - PREDICTED: galactose oxidase [Jatropha curcas]
20 Hb_004116_080 0.1879050627 - - ATATH9, putative [Ricinus communis]

Gene co-expression network

sample Hb_001828_080 Hb_001828_080 Hb_000331_440 Hb_000331_440 Hb_001828_080--Hb_000331_440 Hb_001439_170 Hb_001439_170 Hb_001828_080--Hb_001439_170 Hb_000012_130 Hb_000012_130 Hb_001828_080--Hb_000012_130 Hb_004738_010 Hb_004738_010 Hb_001828_080--Hb_004738_010 Hb_002119_120 Hb_002119_120 Hb_001828_080--Hb_002119_120 Hb_000735_130 Hb_000735_130 Hb_001828_080--Hb_000735_130 Hb_001053_180 Hb_001053_180 Hb_000331_440--Hb_001053_180 Hb_002054_010 Hb_002054_010 Hb_000331_440--Hb_002054_010 Hb_000331_440--Hb_001439_170 Hb_000331_440--Hb_000735_130 Hb_003777_180 Hb_003777_180 Hb_000331_440--Hb_003777_180 Hb_001439_170--Hb_000012_130 Hb_001711_030 Hb_001711_030 Hb_001439_170--Hb_001711_030 Hb_001863_480 Hb_001863_480 Hb_001439_170--Hb_001863_480 Hb_001439_170--Hb_002119_120 Hb_044662_070 Hb_044662_070 Hb_001439_170--Hb_044662_070 Hb_002539_080 Hb_002539_080 Hb_001439_170--Hb_002539_080 Hb_024714_060 Hb_024714_060 Hb_000012_130--Hb_024714_060 Hb_007594_120 Hb_007594_120 Hb_000012_130--Hb_007594_120 Hb_002027_400 Hb_002027_400 Hb_000012_130--Hb_002027_400 Hb_002759_230 Hb_002759_230 Hb_000012_130--Hb_002759_230 Hb_001160_030 Hb_001160_030 Hb_000012_130--Hb_001160_030 Hb_004738_010--Hb_002119_120 Hb_004738_010--Hb_001863_480 Hb_000907_090 Hb_000907_090 Hb_004738_010--Hb_000907_090 Hb_004738_010--Hb_001439_170 Hb_004738_010--Hb_001711_030 Hb_000032_040 Hb_000032_040 Hb_004738_010--Hb_000032_040 Hb_002119_120--Hb_001863_480 Hb_000487_310 Hb_000487_310 Hb_002119_120--Hb_000487_310 Hb_002119_120--Hb_001711_030 Hb_001437_220 Hb_001437_220 Hb_002119_120--Hb_001437_220 Hb_000062_340 Hb_000062_340 Hb_000735_130--Hb_000062_340 Hb_012505_010 Hb_012505_010 Hb_000735_130--Hb_012505_010 Hb_001277_070 Hb_001277_070 Hb_000735_130--Hb_001277_070 Hb_000735_130--Hb_044662_070 Hb_003376_120 Hb_003376_120 Hb_000735_130--Hb_003376_120 Hb_004048_110 Hb_004048_110 Hb_000735_130--Hb_004048_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.1282 0.0805683 5.55801 1.39487 3.45455 5.32098
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.193 13.9537 15.2795 1.90395 4.05687

CAGE analysis