Hb_001828_100

Information

Type -
Description -
Location Contig1828: 97186-100777
Sequence    

Annotation

kegg
ID rcu:RCOM_1679190
description ankyrin repeat-containing protein, putative
nr
ID XP_012071094.1
description PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
swissprot
ID Q4UMH6
description Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=3 SV=1
trembl
ID A0A067LPA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10174 PE=4 SV=1
Gene Ontology
ID GO:0016874
description ankyrin repeat-containing isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17810: 96766-97647 , PASA_asmbl_17811: 97774-98011 , PASA_asmbl_17812: 99103-99565
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001828_100 0.0 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
2 Hb_118228_010 0.2023346905 - - PREDICTED: pirin-like protein [Jatropha curcas]
3 Hb_000261_170 0.2355030744 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
4 Hb_004158_100 0.2389125352 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 [Jatropha curcas]
5 Hb_000109_230 0.2403219776 - - conserved hypothetical protein [Ricinus communis]
6 Hb_128473_010 0.2417573832 - - -
7 Hb_000032_050 0.2446579987 - - hypothetical protein RCOM_1691130 [Ricinus communis]
8 Hb_001998_170 0.248174106 - - BnaC07g08230D [Brassica napus]
9 Hb_155541_010 0.2492753581 - - -
10 Hb_002243_050 0.2563256914 - - PREDICTED: ion channel DMI1-like isoform X2 [Jatropha curcas]
11 Hb_000311_040 0.2574669303 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
12 Hb_011485_090 0.2641712063 - - -
13 Hb_000445_170 0.2644556529 - - PREDICTED: probable methyltransferase PMT10 [Jatropha curcas]
14 Hb_001355_120 0.2692950254 - - cytochrome P450, putative [Ricinus communis]
15 Hb_000483_400 0.2702895151 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
16 Hb_009051_020 0.2718328423 - - Thioredoxin O1 [Morus notabilis]
17 Hb_000649_340 0.272258451 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
18 Hb_124996_010 0.2727288999 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
19 Hb_000162_220 0.2751801319 - - nodulin family protein [Populus trichocarpa]
20 Hb_000603_010 0.2755989386 - - PREDICTED: transmembrane protein 87A-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_001828_100 Hb_001828_100 Hb_118228_010 Hb_118228_010 Hb_001828_100--Hb_118228_010 Hb_000261_170 Hb_000261_170 Hb_001828_100--Hb_000261_170 Hb_004158_100 Hb_004158_100 Hb_001828_100--Hb_004158_100 Hb_000109_230 Hb_000109_230 Hb_001828_100--Hb_000109_230 Hb_128473_010 Hb_128473_010 Hb_001828_100--Hb_128473_010 Hb_000032_050 Hb_000032_050 Hb_001828_100--Hb_000032_050 Hb_155541_010 Hb_155541_010 Hb_118228_010--Hb_155541_010 Hb_011485_090 Hb_011485_090 Hb_118228_010--Hb_011485_090 Hb_074836_010 Hb_074836_010 Hb_118228_010--Hb_074836_010 Hb_010913_010 Hb_010913_010 Hb_118228_010--Hb_010913_010 Hb_118228_010--Hb_000261_170 Hb_000261_170--Hb_128473_010 Hb_001355_120 Hb_001355_120 Hb_000261_170--Hb_001355_120 Hb_000649_340 Hb_000649_340 Hb_000261_170--Hb_000649_340 Hb_000261_170--Hb_004158_100 Hb_004785_050 Hb_004785_050 Hb_000261_170--Hb_004785_050 Hb_004158_100--Hb_001355_120 Hb_000603_010 Hb_000603_010 Hb_004158_100--Hb_000603_010 Hb_118094_010 Hb_118094_010 Hb_004158_100--Hb_118094_010 Hb_001584_030 Hb_001584_030 Hb_004158_100--Hb_001584_030 Hb_001597_050 Hb_001597_050 Hb_000109_230--Hb_001597_050 Hb_007210_020 Hb_007210_020 Hb_000109_230--Hb_007210_020 Hb_000109_230--Hb_000032_050 Hb_000157_050 Hb_000157_050 Hb_000109_230--Hb_000157_050 Hb_178968_040 Hb_178968_040 Hb_000109_230--Hb_178968_040 Hb_073799_010 Hb_073799_010 Hb_128473_010--Hb_073799_010 Hb_128473_010--Hb_000649_340 Hb_000311_040 Hb_000311_040 Hb_128473_010--Hb_000311_040 Hb_008185_020 Hb_008185_020 Hb_128473_010--Hb_008185_020 Hb_000483_400 Hb_000483_400 Hb_128473_010--Hb_000483_400 Hb_001922_180 Hb_001922_180 Hb_000032_050--Hb_001922_180 Hb_000445_170 Hb_000445_170 Hb_000032_050--Hb_000445_170 Hb_113739_010 Hb_113739_010 Hb_000032_050--Hb_113739_010 Hb_033354_020 Hb_033354_020 Hb_000032_050--Hb_033354_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.947872 1.92471 2.30636 16.0544 1.48517 1.08429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.60317 4.23339 0.0701357 0.199044 0.860403

CAGE analysis