Hb_001828_180

Information

Type -
Description -
Location Contig1828: 236272-249221
Sequence    

Annotation

kegg
ID rcu:RCOM_1678560
description 26S proteasome regulatory subunit S3, putative
nr
ID XP_002509556.1
description 26S proteasome regulatory subunit S3, putative [Ricinus communis]
swissprot
ID Q8W575
description COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana GN=CSN3 PE=1 SV=2
trembl
ID B9RBM2
description 26S proteasome regulatory subunit S3, putative OS=Ricinus communis GN=RCOM_1678560 PE=4 SV=1
Gene Ontology
ID GO:0000502
description cop9 signalosome complex subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17835: 236264-249216
cDNA
(Sanger)
(ID:Location)		 001_D10.ab1: 238887-249212 , 031_H19.ab1: 239219-249212 , 034_E10r.ab1: 249618-251458

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001828_180 0.0 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
2 Hb_000663_060 0.0508118455 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
3 Hb_000363_190 0.0568666225 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
4 Hb_000778_010 0.0647518266 - - hypothetical protein [Bacillus subtilis]
5 Hb_023001_040 0.0694677332 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
6 Hb_002301_100 0.0694849752 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
7 Hb_002439_010 0.0698664458 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
8 Hb_000510_340 0.0702209138 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
9 Hb_010921_050 0.0705160858 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
10 Hb_000167_010 0.0711624151 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001269_600 0.0736346653 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_000409_050 0.0754595664 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
13 Hb_000120_370 0.0754841914 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
14 Hb_000327_250 0.0765728859 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
15 Hb_000477_050 0.0766689122 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
16 Hb_021576_010 0.0768744702 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
17 Hb_002232_360 0.0774539073 - - PREDICTED: proline iminopeptidase isoform X2 [Jatropha curcas]
18 Hb_001301_150 0.077788026 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
19 Hb_000836_460 0.0781899666 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
20 Hb_004096_110 0.0782804627 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]

Gene co-expression network

sample Hb_001828_180 Hb_001828_180 Hb_000663_060 Hb_000663_060 Hb_001828_180--Hb_000663_060 Hb_000363_190 Hb_000363_190 Hb_001828_180--Hb_000363_190 Hb_000778_010 Hb_000778_010 Hb_001828_180--Hb_000778_010 Hb_023001_040 Hb_023001_040 Hb_001828_180--Hb_023001_040 Hb_002301_100 Hb_002301_100 Hb_001828_180--Hb_002301_100 Hb_002439_010 Hb_002439_010 Hb_001828_180--Hb_002439_010 Hb_000663_060--Hb_000778_010 Hb_001269_130 Hb_001269_130 Hb_000663_060--Hb_001269_130 Hb_000663_060--Hb_000363_190 Hb_000663_060--Hb_023001_040 Hb_163175_010 Hb_163175_010 Hb_000663_060--Hb_163175_010 Hb_000409_050 Hb_000409_050 Hb_000363_190--Hb_000409_050 Hb_000398_060 Hb_000398_060 Hb_000363_190--Hb_000398_060 Hb_002232_360 Hb_002232_360 Hb_000363_190--Hb_002232_360 Hb_000363_190--Hb_002301_100 Hb_000392_420 Hb_000392_420 Hb_000778_010--Hb_000392_420 Hb_000365_230 Hb_000365_230 Hb_000778_010--Hb_000365_230 Hb_164390_010 Hb_164390_010 Hb_000778_010--Hb_164390_010 Hb_007472_070 Hb_007472_070 Hb_000778_010--Hb_007472_070 Hb_000173_280 Hb_000173_280 Hb_000778_010--Hb_000173_280 Hb_003058_120 Hb_003058_120 Hb_023001_040--Hb_003058_120 Hb_149985_010 Hb_149985_010 Hb_023001_040--Hb_149985_010 Hb_005588_060 Hb_005588_060 Hb_023001_040--Hb_005588_060 Hb_000167_010 Hb_000167_010 Hb_023001_040--Hb_000167_010 Hb_002301_100--Hb_000398_060 Hb_012733_040 Hb_012733_040 Hb_002301_100--Hb_012733_040 Hb_001242_120 Hb_001242_120 Hb_002301_100--Hb_001242_120 Hb_001493_150 Hb_001493_150 Hb_002301_100--Hb_001493_150 Hb_000510_340 Hb_000510_340 Hb_002439_010--Hb_000510_340 Hb_002439_010--Hb_000167_010 Hb_004319_080 Hb_004319_080 Hb_002439_010--Hb_004319_080 Hb_003883_060 Hb_003883_060 Hb_002439_010--Hb_003883_060 Hb_001301_150 Hb_001301_150 Hb_002439_010--Hb_001301_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.10738 10.579 16.1154 18.8432 9.73466 9.23667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7763 13.6783 10.6902 23.8472 15.1322

CAGE analysis