Hb_001828_190

Information

Type -
Description -
Location Contig1828: 249335-251532
Sequence    

Annotation

kegg
ID pmum:103318898
description phosducin-like protein 3
nr
ID XP_008218564.1
description PREDICTED: phosducin-like protein 3 [Prunus mume]
swissprot
ID Q8MR62
description Viral IAP-associated factor homolog OS=Drosophila melanogaster GN=viaf PE=1 SV=1
trembl
ID M5VZT3
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010356mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17836: 249370-251510
cDNA
(Sanger)
(ID:Location)		 023_B04.ab1: 249371-251264 , 034_E10.ab1: 249370-251369

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001828_190 0.0 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
2 Hb_001090_040 0.0639855764 - - Transmembrane protein 50A, putative [Ricinus communis]
3 Hb_007017_030 0.0672449374 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
4 Hb_003525_010 0.0690682749 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
5 Hb_002226_070 0.0704064224 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
6 Hb_007691_030 0.0718825556 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
7 Hb_000092_170 0.0731224504 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
8 Hb_000085_160 0.0736533599 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
9 Hb_002473_130 0.0743515477 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
10 Hb_000120_790 0.0748415576 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
11 Hb_033834_040 0.0749998776 - - conserved hypothetical protein [Ricinus communis]
12 Hb_033594_120 0.0752421328 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
13 Hb_000960_060 0.0758094752 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
14 Hb_005305_080 0.0763788826 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
15 Hb_008406_190 0.0770991713 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
16 Hb_003126_050 0.0777172053 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
17 Hb_003428_030 0.0779897057 - - tRNA, putative [Ricinus communis]
18 Hb_019280_040 0.0784458402 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000227_080 0.0787386611 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004032_010 0.0789500818 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]

Gene co-expression network

sample Hb_001828_190 Hb_001828_190 Hb_001090_040 Hb_001090_040 Hb_001828_190--Hb_001090_040 Hb_007017_030 Hb_007017_030 Hb_001828_190--Hb_007017_030 Hb_003525_010 Hb_003525_010 Hb_001828_190--Hb_003525_010 Hb_002226_070 Hb_002226_070 Hb_001828_190--Hb_002226_070 Hb_007691_030 Hb_007691_030 Hb_001828_190--Hb_007691_030 Hb_000092_170 Hb_000092_170 Hb_001828_190--Hb_000092_170 Hb_010655_010 Hb_010655_010 Hb_001090_040--Hb_010655_010 Hb_000960_060 Hb_000960_060 Hb_001090_040--Hb_000960_060 Hb_001935_130 Hb_001935_130 Hb_001090_040--Hb_001935_130 Hb_000329_030 Hb_000329_030 Hb_001090_040--Hb_000329_030 Hb_000331_450 Hb_000331_450 Hb_001090_040--Hb_000331_450 Hb_002893_080 Hb_002893_080 Hb_007017_030--Hb_002893_080 Hb_001279_150 Hb_001279_150 Hb_007017_030--Hb_001279_150 Hb_008406_190 Hb_008406_190 Hb_007017_030--Hb_008406_190 Hb_003633_030 Hb_003633_030 Hb_007017_030--Hb_003633_030 Hb_015934_070 Hb_015934_070 Hb_007017_030--Hb_015934_070 Hb_003525_010--Hb_000092_170 Hb_000085_160 Hb_000085_160 Hb_003525_010--Hb_000085_160 Hb_000334_280 Hb_000334_280 Hb_003525_010--Hb_000334_280 Hb_000225_040 Hb_000225_040 Hb_003525_010--Hb_000225_040 Hb_003428_030 Hb_003428_030 Hb_003525_010--Hb_003428_030 Hb_000215_110 Hb_000215_110 Hb_003525_010--Hb_000215_110 Hb_004032_010 Hb_004032_010 Hb_002226_070--Hb_004032_010 Hb_033834_040 Hb_033834_040 Hb_002226_070--Hb_033834_040 Hb_001489_060 Hb_001489_060 Hb_002226_070--Hb_001489_060 Hb_000926_250 Hb_000926_250 Hb_002226_070--Hb_000926_250 Hb_000056_200 Hb_000056_200 Hb_002226_070--Hb_000056_200 Hb_000059_370 Hb_000059_370 Hb_002226_070--Hb_000059_370 Hb_007691_030--Hb_003428_030 Hb_005144_160 Hb_005144_160 Hb_007691_030--Hb_005144_160 Hb_002739_100 Hb_002739_100 Hb_007691_030--Hb_002739_100 Hb_000876_070 Hb_000876_070 Hb_007691_030--Hb_000876_070 Hb_003092_040 Hb_003092_040 Hb_007691_030--Hb_003092_040 Hb_000580_180 Hb_000580_180 Hb_007691_030--Hb_000580_180 Hb_044728_010 Hb_044728_010 Hb_000092_170--Hb_044728_010 Hb_000107_330 Hb_000107_330 Hb_000092_170--Hb_000107_330 Hb_011485_070 Hb_011485_070 Hb_000092_170--Hb_011485_070 Hb_002078_350 Hb_002078_350 Hb_000092_170--Hb_002078_350 Hb_009767_110 Hb_009767_110 Hb_000092_170--Hb_009767_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.5412 16.8081 16.7011 29.6257 41.9286 45.6021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.8855 50.5302 34.5549 29.6859 19.2469

CAGE analysis