Hb_001828_200

Information

Type -
Description -
Location Contig1828: 254095-258852
Sequence    

Annotation

kegg
ID pop:POPTR_0017s10450g
description POPTRDRAFT_825501; ribosomal protein L13
nr
ID XP_002323992.1
description ribosomal protein L13 [Populus trichocarpa]
swissprot
ID Q110D4
description 50S ribosomal protein L13 OS=Trichodesmium erythraeum (strain IMS101) GN=rplM PE=3 SV=1
trembl
ID B9IJJ7
description Ribosomal protein L13 OS=Populus trichocarpa GN=POPTR_0017s10450g PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17837: 254283-255696
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001828_200 0.0 - - ribosomal protein L13 [Populus trichocarpa]
2 Hb_007164_020 0.0863123414 - - hypothetical protein glysoja_025872 [Glycine soja]
3 Hb_134951_010 0.0920632582 - - PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
4 Hb_052764_050 0.0986400184 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
5 Hb_001288_080 0.10061103 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
6 Hb_001135_020 0.1030063996 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
7 Hb_002292_010 0.1047861957 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
8 Hb_001720_010 0.1056560716 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
9 Hb_001623_140 0.1086089612 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
10 Hb_004324_340 0.1091407622 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001486_080 0.1095112776 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
12 Hb_002675_260 0.1104421602 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
13 Hb_007007_050 0.1113851099 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
14 Hb_000085_240 0.1158998637 - - fimbrin, putative [Ricinus communis]
15 Hb_001898_230 0.1162403536 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
16 Hb_000394_190 0.1163670629 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
17 Hb_001610_110 0.1169422512 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
18 Hb_002192_080 0.1189098552 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
19 Hb_000244_300 0.1197779031 - - PREDICTED: probable 39S ribosomal protein L17, mitochondrial [Jatropha curcas]
20 Hb_000367_200 0.1223096204 - - hypothetical protein CISIN_1g0362003mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_001828_200 Hb_001828_200 Hb_007164_020 Hb_007164_020 Hb_001828_200--Hb_007164_020 Hb_134951_010 Hb_134951_010 Hb_001828_200--Hb_134951_010 Hb_052764_050 Hb_052764_050 Hb_001828_200--Hb_052764_050 Hb_001288_080 Hb_001288_080 Hb_001828_200--Hb_001288_080 Hb_001135_020 Hb_001135_020 Hb_001828_200--Hb_001135_020 Hb_002292_010 Hb_002292_010 Hb_001828_200--Hb_002292_010 Hb_189147_010 Hb_189147_010 Hb_007164_020--Hb_189147_010 Hb_001504_150 Hb_001504_150 Hb_007164_020--Hb_001504_150 Hb_001898_230 Hb_001898_230 Hb_007164_020--Hb_001898_230 Hb_106552_050 Hb_106552_050 Hb_007164_020--Hb_106552_050 Hb_000085_240 Hb_000085_240 Hb_007164_020--Hb_000085_240 Hb_000359_330 Hb_000359_330 Hb_007164_020--Hb_000359_330 Hb_001486_080 Hb_001486_080 Hb_134951_010--Hb_001486_080 Hb_134951_010--Hb_001898_230 Hb_002024_040 Hb_002024_040 Hb_134951_010--Hb_002024_040 Hb_002284_280 Hb_002284_280 Hb_134951_010--Hb_002284_280 Hb_001623_140 Hb_001623_140 Hb_134951_010--Hb_001623_140 Hb_001610_110 Hb_001610_110 Hb_052764_050--Hb_001610_110 Hb_052764_050--Hb_001288_080 Hb_012114_060 Hb_012114_060 Hb_052764_050--Hb_012114_060 Hb_000548_050 Hb_000548_050 Hb_052764_050--Hb_000548_050 Hb_052764_050--Hb_001623_140 Hb_001720_010 Hb_001720_010 Hb_001288_080--Hb_001720_010 Hb_001288_080--Hb_001610_110 Hb_001168_040 Hb_001168_040 Hb_001288_080--Hb_001168_040 Hb_001288_080--Hb_001623_140 Hb_004324_340 Hb_004324_340 Hb_001288_080--Hb_004324_340 Hb_001135_020--Hb_002292_010 Hb_001135_020--Hb_001288_080 Hb_007007_050 Hb_007007_050 Hb_001135_020--Hb_007007_050 Hb_001135_020--Hb_004324_340 Hb_141532_010 Hb_141532_010 Hb_001135_020--Hb_141532_010 Hb_002292_010--Hb_007007_050 Hb_004363_010 Hb_004363_010 Hb_002292_010--Hb_004363_010 Hb_002292_010--Hb_141532_010 Hb_002639_150 Hb_002639_150 Hb_002292_010--Hb_002639_150 Hb_003687_230 Hb_003687_230 Hb_002292_010--Hb_003687_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.5368 30.3678 24.3313 8.73367 25.6159 26.4568
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.8659 29.821 18.5152 10.1071 2.81535

CAGE analysis