Hb_001829_010

Information

Type -
Description -
Location Contig1829: 2534-29772
Sequence    

Annotation

kegg
ID rcu:RCOM_1299420
description o-linked n-acetylglucosamine transferase, ogt, putative
nr
ID XP_012078857.1
description PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8M4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13387 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001829_010 0.0 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X2 [Jatropha curcas]
2 Hb_000684_420 0.0599582928 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
3 Hb_006913_040 0.0621827135 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
4 Hb_002097_090 0.0670080638 - - Splicing factor 3A subunit, putative [Ricinus communis]
5 Hb_000645_150 0.068388243 - - zinc finger protein, putative [Ricinus communis]
6 Hb_001019_170 0.0691446997 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
7 Hb_000076_080 0.0730548519 - - PREDICTED: protein MOS2 [Jatropha curcas]
8 Hb_031091_010 0.0743928331 - - crooked neck protein, putative [Ricinus communis]
9 Hb_003581_120 0.0751803848 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
10 Hb_000186_280 0.0791935015 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
11 Hb_002716_140 0.0795383706 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
12 Hb_000001_180 0.0806005397 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
13 Hb_000236_370 0.0810279214 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
14 Hb_002400_180 0.0815724972 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009620_040 0.0820713964 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
16 Hb_004724_360 0.0837999616 - - OTU-like cysteine protease family protein [Populus trichocarpa]
17 Hb_000703_080 0.0847563478 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
18 Hb_012305_070 0.0857961067 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002235_320 0.0871954086 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
20 Hb_002820_040 0.0878518906 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001829_010 Hb_001829_010 Hb_000684_420 Hb_000684_420 Hb_001829_010--Hb_000684_420 Hb_006913_040 Hb_006913_040 Hb_001829_010--Hb_006913_040 Hb_002097_090 Hb_002097_090 Hb_001829_010--Hb_002097_090 Hb_000645_150 Hb_000645_150 Hb_001829_010--Hb_000645_150 Hb_001019_170 Hb_001019_170 Hb_001829_010--Hb_001019_170 Hb_000076_080 Hb_000076_080 Hb_001829_010--Hb_000076_080 Hb_000684_420--Hb_000076_080 Hb_000684_420--Hb_002097_090 Hb_000186_280 Hb_000186_280 Hb_000684_420--Hb_000186_280 Hb_002400_180 Hb_002400_180 Hb_000684_420--Hb_002400_180 Hb_004724_360 Hb_004724_360 Hb_000684_420--Hb_004724_360 Hb_073171_080 Hb_073171_080 Hb_000684_420--Hb_073171_080 Hb_006913_040--Hb_000645_150 Hb_006913_040--Hb_001019_170 Hb_002820_040 Hb_002820_040 Hb_006913_040--Hb_002820_040 Hb_006913_040--Hb_002097_090 Hb_000333_100 Hb_000333_100 Hb_006913_040--Hb_000333_100 Hb_002097_090--Hb_000645_150 Hb_004934_090 Hb_004934_090 Hb_002097_090--Hb_004934_090 Hb_002097_090--Hb_000076_080 Hb_009620_040 Hb_009620_040 Hb_002097_090--Hb_009620_040 Hb_000803_300 Hb_000803_300 Hb_002097_090--Hb_000803_300 Hb_000236_370 Hb_000236_370 Hb_000645_150--Hb_000236_370 Hb_012305_070 Hb_012305_070 Hb_000645_150--Hb_012305_070 Hb_000645_150--Hb_000186_280 Hb_008714_020 Hb_008714_020 Hb_001019_170--Hb_008714_020 Hb_008695_120 Hb_008695_120 Hb_001019_170--Hb_008695_120 Hb_003581_120 Hb_003581_120 Hb_001019_170--Hb_003581_120 Hb_001019_170--Hb_002400_180 Hb_001019_170--Hb_000076_080 Hb_001504_160 Hb_001504_160 Hb_000076_080--Hb_001504_160 Hb_000076_080--Hb_004724_360 Hb_000076_080--Hb_002400_180 Hb_000076_080--Hb_000186_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.725 20.9431 5.54775 8.20834 34.8837 42.5623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9654 16.3903 12.1989 9.58722 5.69167

CAGE analysis