Hb_001829_060

Information

Type -
Description -
Location Contig1829: 54968-61081
Sequence    

Annotation

kegg
ID rcu:RCOM_1220860
description Eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_002519577.1
description Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
swissprot
ID Q6INR1
description Eukaryotic translation initiation factor 3 subunit J OS=Xenopus laevis GN=eif3j PE=2 SV=1
trembl
ID B9S0Q8
description Eukaryotic translation initiation factor 3 subunit J OS=Ricinus communis GN=RCOM_1220860 PE=3 SV=1
Gene Ontology
ID GO:0005852
description eukaryotic translation initiation factor 3 subunit j-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17846: 55048-61701 , PASA_asmbl_17848: 61082-61431
cDNA
(Sanger)
(ID:Location)		 001_D17.ab1: 55190-61701

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001829_060 0.0 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
2 Hb_001109_020 0.0489862685 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000329_310 0.0523051064 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
4 Hb_000046_110 0.0548824685 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
5 Hb_003927_130 0.0566688197 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
6 Hb_009666_040 0.0567508976 - - glutathione transferase, putative [Ricinus communis]
7 Hb_000751_130 0.0593837376 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
8 Hb_000086_070 0.063173074 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
9 Hb_002471_080 0.0696518712 - - oxidoreductase, putative [Ricinus communis]
10 Hb_001862_100 0.0710824663 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
11 Hb_003455_040 0.071298086 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
12 Hb_000205_270 0.0719003683 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
13 Hb_001141_280 0.0728720483 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
14 Hb_005731_170 0.0735875025 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
15 Hb_000239_010 0.0749405356 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_001433_050 0.0756322864 - - 60S ribosomal protein L18, putative [Ricinus communis]
17 Hb_001141_030 0.0774301634 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
18 Hb_000444_050 0.0782037767 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
19 Hb_000979_230 0.0793757705 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
20 Hb_000024_030 0.0794796838 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]

Gene co-expression network

sample Hb_001829_060 Hb_001829_060 Hb_001109_020 Hb_001109_020 Hb_001829_060--Hb_001109_020 Hb_000329_310 Hb_000329_310 Hb_001829_060--Hb_000329_310 Hb_000046_110 Hb_000046_110 Hb_001829_060--Hb_000046_110 Hb_003927_130 Hb_003927_130 Hb_001829_060--Hb_003927_130 Hb_009666_040 Hb_009666_040 Hb_001829_060--Hb_009666_040 Hb_000751_130 Hb_000751_130 Hb_001829_060--Hb_000751_130 Hb_001109_020--Hb_000046_110 Hb_001109_020--Hb_003927_130 Hb_000205_270 Hb_000205_270 Hb_001109_020--Hb_000205_270 Hb_000883_050 Hb_000883_050 Hb_001109_020--Hb_000883_050 Hb_000086_070 Hb_000086_070 Hb_001109_020--Hb_000086_070 Hb_000329_310--Hb_000205_270 Hb_000329_310--Hb_001109_020 Hb_003455_040 Hb_003455_040 Hb_000329_310--Hb_003455_040 Hb_000329_310--Hb_003927_130 Hb_000170_010 Hb_000170_010 Hb_000329_310--Hb_000170_010 Hb_000046_110--Hb_000751_130 Hb_008311_010 Hb_008311_010 Hb_000046_110--Hb_008311_010 Hb_003632_010 Hb_003632_010 Hb_000046_110--Hb_003632_010 Hb_000046_110--Hb_003927_130 Hb_001383_060 Hb_001383_060 Hb_003927_130--Hb_001383_060 Hb_003927_130--Hb_000086_070 Hb_001433_050 Hb_001433_050 Hb_003927_130--Hb_001433_050 Hb_003927_130--Hb_000883_050 Hb_001141_280 Hb_001141_280 Hb_009666_040--Hb_001141_280 Hb_000239_010 Hb_000239_010 Hb_009666_040--Hb_000239_010 Hb_009666_040--Hb_000205_270 Hb_009666_040--Hb_000329_310 Hb_000979_230 Hb_000979_230 Hb_009666_040--Hb_000979_230 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000087_020 Hb_000087_020 Hb_000751_130--Hb_000087_020 Hb_004032_100 Hb_004032_100 Hb_000751_130--Hb_004032_100 Hb_000172_030 Hb_000172_030 Hb_000751_130--Hb_000172_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
110.623 35.8627 49.4933 77.688 109.695 219.674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
243.127 345.523 280.061 88.8856 54.2788

CAGE analysis