Hb_001832_110

Information

Type -
Description -
Location Contig1832: 100305-107748
Sequence    

Annotation

kegg
ID rcu:RCOM_1046950
description hypothetical protein
nr
ID XP_012076933.1
description PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
swissprot
ID Q8RWW0
description Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana GN=ALE2 PE=1 SV=1
trembl
ID A0A067KCH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07408 PE=4 SV=1
Gene Ontology
ID GO:0004672
description receptor-like serine threonine-protein kinase ale2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17886: 100211-101025 , PASA_asmbl_17887: 101085-101655 , PASA_asmbl_17888: 102310-102574 , PASA_asmbl_17889: 104023-104533 , PASA_asmbl_17890: 104602-105332 , PASA_asmbl_17891: 105341-107620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001832_110 0.0 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
2 Hb_000336_280 0.0576279191 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
3 Hb_002304_190 0.066181307 - - PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Jatropha curcas]
4 Hb_002685_100 0.0713952765 - - low temperature inducible SLTI66 [Glycine max]
5 Hb_001226_100 0.0952437815 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
6 Hb_001439_040 0.0995698766 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
7 Hb_000018_120 0.1090922382 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_009486_120 0.1112988975 - - hypothetical protein PRUPE_ppa004149mg [Prunus persica]
9 Hb_033312_050 0.1133629207 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
10 Hb_000215_130 0.1146018157 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
11 Hb_000696_250 0.1196921796 - - PREDICTED: patellin-6 [Jatropha curcas]
12 Hb_022092_050 0.1225681635 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
13 Hb_000017_320 0.1227607979 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
14 Hb_005333_210 0.1244086942 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
15 Hb_123560_020 0.1312888734 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
16 Hb_000616_010 0.136457633 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001349_020 0.1385867505 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
18 Hb_021346_020 0.139871377 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
19 Hb_000753_180 0.1427403454 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
20 Hb_001186_120 0.1435026865 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_001832_110 Hb_001832_110 Hb_000336_280 Hb_000336_280 Hb_001832_110--Hb_000336_280 Hb_002304_190 Hb_002304_190 Hb_001832_110--Hb_002304_190 Hb_002685_100 Hb_002685_100 Hb_001832_110--Hb_002685_100 Hb_001226_100 Hb_001226_100 Hb_001832_110--Hb_001226_100 Hb_001439_040 Hb_001439_040 Hb_001832_110--Hb_001439_040 Hb_000018_120 Hb_000018_120 Hb_001832_110--Hb_000018_120 Hb_000336_280--Hb_002685_100 Hb_000336_280--Hb_001226_100 Hb_005333_210 Hb_005333_210 Hb_000336_280--Hb_005333_210 Hb_000215_130 Hb_000215_130 Hb_000336_280--Hb_000215_130 Hb_000336_280--Hb_002304_190 Hb_002304_190--Hb_002685_100 Hb_033312_050 Hb_033312_050 Hb_002304_190--Hb_033312_050 Hb_000017_320 Hb_000017_320 Hb_002304_190--Hb_000017_320 Hb_009486_120 Hb_009486_120 Hb_002304_190--Hb_009486_120 Hb_002685_100--Hb_000017_320 Hb_001358_120 Hb_001358_120 Hb_002685_100--Hb_001358_120 Hb_002685_100--Hb_005333_210 Hb_001226_100--Hb_000215_130 Hb_001186_120 Hb_001186_120 Hb_001226_100--Hb_001186_120 Hb_001226_100--Hb_001439_040 Hb_001226_100--Hb_005333_210 Hb_001439_040--Hb_002304_190 Hb_001439_040--Hb_000336_280 Hb_001439_040--Hb_002685_100 Hb_001439_040--Hb_000215_130 Hb_000696_250 Hb_000696_250 Hb_000018_120--Hb_000696_250 Hb_003592_060 Hb_003592_060 Hb_000018_120--Hb_003592_060 Hb_000941_010 Hb_000941_010 Hb_000018_120--Hb_000941_010 Hb_000018_120--Hb_000336_280 Hb_022092_050 Hb_022092_050 Hb_000018_120--Hb_022092_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00945158 0.43987 2.63899 1.33931 0.022723 0.0129216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.02141 0.00842453 0.0485469 3.15307 1.11948

CAGE analysis