Hb_001832_120

Information

Type -
Description -
Location Contig1832: 108437-110963
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G136800g
description hypothetical protein
nr
ID XP_007154658.1
description hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
swissprot
ID P61166
description Transmembrane protein 258 OS=Mus musculus GN=Tmem258 PE=3 SV=1
trembl
ID V7C909
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G136800g PE=4 SV=1
Gene Ontology
ID GO:0016023
description transmembrane protein 258

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17891: 105341-107620 , PASA_asmbl_17892: 108463-111024
cDNA
(Sanger)
(ID:Location)		 020_H14.ab1: 108643-110697 , 032_F19.ab1: 108647-110670 , 041_O19.ab1: 108643-110697 , 045_C20.ab1: 108643-110697

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001832_120 0.0 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
2 Hb_001016_090 0.080054307 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
3 Hb_010827_020 0.0851533093 - - 60S ribosomal protein L17B [Hevea brasiliensis]
4 Hb_001863_090 0.0925445968 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
5 Hb_032260_030 0.0959866675 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
6 Hb_148930_010 0.109012528 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
7 Hb_001700_020 0.1097545785 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
8 Hb_002248_100 0.1101880769 - - hypothetical protein VITISV_027197 [Vitis vinifera]
9 Hb_001538_100 0.1109375243 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
10 Hb_183086_040 0.1173486095 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
11 Hb_002107_120 0.1196398195 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
12 Hb_001545_060 0.121414274 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
13 Hb_003376_130 0.1230083732 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
14 Hb_001017_070 0.1231997096 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000963_030 0.1240892356 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
16 Hb_000881_080 0.1247261872 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000193_120 0.1260894554 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
18 Hb_002835_320 0.1265817113 - - 60S ribosomal protein L27B [Hevea brasiliensis]
19 Hb_005000_180 0.1272215177 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
20 Hb_000085_330 0.1285578821 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]

Gene co-expression network

sample Hb_001832_120 Hb_001832_120 Hb_001016_090 Hb_001016_090 Hb_001832_120--Hb_001016_090 Hb_010827_020 Hb_010827_020 Hb_001832_120--Hb_010827_020 Hb_001863_090 Hb_001863_090 Hb_001832_120--Hb_001863_090 Hb_032260_030 Hb_032260_030 Hb_001832_120--Hb_032260_030 Hb_148930_010 Hb_148930_010 Hb_001832_120--Hb_148930_010 Hb_001700_020 Hb_001700_020 Hb_001832_120--Hb_001700_020 Hb_001016_090--Hb_032260_030 Hb_002374_390 Hb_002374_390 Hb_001016_090--Hb_002374_390 Hb_148200_010 Hb_148200_010 Hb_001016_090--Hb_148200_010 Hb_002925_030 Hb_002925_030 Hb_001016_090--Hb_002925_030 Hb_000905_180 Hb_000905_180 Hb_001016_090--Hb_000905_180 Hb_001016_090--Hb_148930_010 Hb_002248_100 Hb_002248_100 Hb_010827_020--Hb_002248_100 Hb_000635_080 Hb_000635_080 Hb_010827_020--Hb_000635_080 Hb_000780_210 Hb_000780_210 Hb_010827_020--Hb_000780_210 Hb_010827_020--Hb_001700_020 Hb_183086_040 Hb_183086_040 Hb_010827_020--Hb_183086_040 Hb_001863_090--Hb_002925_030 Hb_011311_010 Hb_011311_010 Hb_001863_090--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_001863_090--Hb_002660_030 Hb_001863_090--Hb_001016_090 Hb_003398_120 Hb_003398_120 Hb_001863_090--Hb_003398_120 Hb_001863_090--Hb_032260_030 Hb_000881_080 Hb_000881_080 Hb_032260_030--Hb_000881_080 Hb_032260_030--Hb_002925_030 Hb_005883_100 Hb_005883_100 Hb_032260_030--Hb_005883_100 Hb_032260_030--Hb_003398_120 Hb_002835_320 Hb_002835_320 Hb_148930_010--Hb_002835_320 Hb_001433_050 Hb_001433_050 Hb_148930_010--Hb_001433_050 Hb_001248_080 Hb_001248_080 Hb_148930_010--Hb_001248_080 Hb_003376_130 Hb_003376_130 Hb_148930_010--Hb_003376_130 Hb_148930_010--Hb_148200_010 Hb_148930_010--Hb_003398_120 Hb_026048_070 Hb_026048_070 Hb_001700_020--Hb_026048_070 Hb_001700_020--Hb_001016_090 Hb_000163_130 Hb_000163_130 Hb_001700_020--Hb_000163_130 Hb_001700_020--Hb_000780_210 Hb_000389_080 Hb_000389_080 Hb_001700_020--Hb_000389_080 Hb_012265_010 Hb_012265_010 Hb_001700_020--Hb_012265_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.0557 23.9966 18.1532 25.8621 39.4226 37.4179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
166.726 240.437 103.652 97.9173 11.7554

CAGE analysis