Hb_001832_150

Information

Type -
Description -
Location Contig1832: 147183-147695
Sequence    

Annotation

kegg
ID rcu:RCOM_1046930
description hypothetical protein
nr
ID XP_012076929.1
description PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07405 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17899: 145865-146351 , PASA_asmbl_17900: 147179-147929
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001832_150 0.0 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
2 Hb_000224_200 0.1928742463 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
3 Hb_018279_020 0.1944588003 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
4 Hb_002226_040 0.2130267382 - - PREDICTED: uncharacterized protein LOC105641318 isoform X2 [Jatropha curcas]
5 Hb_182005_010 0.2145573318 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
6 Hb_001862_120 0.2197123537 - - PREDICTED: aspartic proteinase-like protein 2 [Jatropha curcas]
7 Hb_000465_510 0.220277333 - - PREDICTED: GTP-binding protein YPTM2 [Populus euphratica]
8 Hb_009976_010 0.2301977535 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
9 Hb_033376_010 0.2309484286 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
10 Hb_001288_030 0.2377734316 - - -
11 Hb_000577_090 0.2378817562 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
12 Hb_000975_180 0.2435869945 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
13 Hb_000463_130 0.2440356198 - - unnamed protein product [Coffea canephora]
14 Hb_000347_330 0.2474882302 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
15 Hb_124996_010 0.251222807 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
16 Hb_000723_250 0.2531469358 - - hypothetical protein JCGZ_16520 [Jatropha curcas]
17 Hb_021924_010 0.2534843457 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
18 Hb_000768_140 0.2543782535 transcription factor TF Family: SWI/SNF-BAF60b tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]
19 Hb_004102_030 0.2569602536 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
20 Hb_001322_070 0.256993985 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_001832_150 Hb_001832_150 Hb_000224_200 Hb_000224_200 Hb_001832_150--Hb_000224_200 Hb_018279_020 Hb_018279_020 Hb_001832_150--Hb_018279_020 Hb_002226_040 Hb_002226_040 Hb_001832_150--Hb_002226_040 Hb_182005_010 Hb_182005_010 Hb_001832_150--Hb_182005_010 Hb_001862_120 Hb_001862_120 Hb_001832_150--Hb_001862_120 Hb_000465_510 Hb_000465_510 Hb_001832_150--Hb_000465_510 Hb_014783_010 Hb_014783_010 Hb_000224_200--Hb_014783_010 Hb_002809_130 Hb_002809_130 Hb_000224_200--Hb_002809_130 Hb_000167_060 Hb_000167_060 Hb_000224_200--Hb_000167_060 Hb_019249_010 Hb_019249_010 Hb_000224_200--Hb_019249_010 Hb_003371_180 Hb_003371_180 Hb_000224_200--Hb_003371_180 Hb_002900_160 Hb_002900_160 Hb_000224_200--Hb_002900_160 Hb_018279_020--Hb_001862_120 Hb_018279_020--Hb_002226_040 Hb_018279_020--Hb_000224_200 Hb_003206_120 Hb_003206_120 Hb_018279_020--Hb_003206_120 Hb_000003_540 Hb_000003_540 Hb_018279_020--Hb_000003_540 Hb_010815_030 Hb_010815_030 Hb_002226_040--Hb_010815_030 Hb_000948_220 Hb_000948_220 Hb_002226_040--Hb_000948_220 Hb_000030_200 Hb_000030_200 Hb_002226_040--Hb_000030_200 Hb_000175_320 Hb_000175_320 Hb_002226_040--Hb_000175_320 Hb_007120_090 Hb_007120_090 Hb_002226_040--Hb_007120_090 Hb_001288_030 Hb_001288_030 Hb_002226_040--Hb_001288_030 Hb_021924_010 Hb_021924_010 Hb_182005_010--Hb_021924_010 Hb_001488_400 Hb_001488_400 Hb_182005_010--Hb_001488_400 Hb_000500_210 Hb_000500_210 Hb_182005_010--Hb_000500_210 Hb_000975_180 Hb_000975_180 Hb_182005_010--Hb_000975_180 Hb_005245_070 Hb_005245_070 Hb_182005_010--Hb_005245_070 Hb_033376_010 Hb_033376_010 Hb_182005_010--Hb_033376_010 Hb_001386_110 Hb_001386_110 Hb_001862_120--Hb_001386_110 Hb_000676_140 Hb_000676_140 Hb_001862_120--Hb_000676_140 Hb_001221_560 Hb_001221_560 Hb_001862_120--Hb_001221_560 Hb_000627_260 Hb_000627_260 Hb_001862_120--Hb_000627_260 Hb_001623_100 Hb_001623_100 Hb_001862_120--Hb_001623_100 Hb_003929_150 Hb_003929_150 Hb_000465_510--Hb_003929_150 Hb_001322_070 Hb_001322_070 Hb_000465_510--Hb_001322_070 Hb_000768_130 Hb_000768_130 Hb_000465_510--Hb_000768_130 Hb_002060_010 Hb_002060_010 Hb_000465_510--Hb_002060_010 Hb_000327_380 Hb_000327_380 Hb_000465_510--Hb_000327_380 Hb_010560_030 Hb_010560_030 Hb_000465_510--Hb_010560_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.08103 11.9249 5.36971 26.1439 2.44857 4.73536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.6638 41.1579 2.75522 0.335535 9.31534

CAGE analysis