Hb_001832_170

Information

Type -
Description -
Location Contig1832: 161457-181617
Sequence    

Annotation

kegg
ID rcu:RCOM_1046790
description beta-galactosidase, putative (EC:3.2.1.23)
nr
ID XP_012076927.1
description PREDICTED: beta-galactosidase-like [Jatropha curcas]
swissprot
ID P48980
description Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1
trembl
ID A0A067KPU1
description Beta-galactosidase OS=Jatropha curcas GN=JCGZ_07400 PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-galactosidase-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17903: 168412-169918 , PASA_asmbl_17904: 175274-181297 , PASA_asmbl_17905: 179606-180301 , PASA_asmbl_17906: 175380-176338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001832_170 0.0 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
2 Hb_000417_220 0.1048709868 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Cucumis melo]
3 Hb_000005_370 0.1149478351 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
4 Hb_002400_300 0.1153182823 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
5 Hb_000552_010 0.1191989399 - - PREDICTED: fasciclin-like arabinogalactan protein 2 [Jatropha curcas]
6 Hb_000270_340 0.1426283314 - - hypothetical protein JCGZ_11546 [Jatropha curcas]
7 Hb_000139_060 0.1454076081 - - Photosystem I reaction center subunit II, chloroplast precursor, putative [Ricinus communis]
8 Hb_000176_050 0.1501581109 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
9 Hb_000920_100 0.1507826356 - - o-methyltransferase, putative [Ricinus communis]
10 Hb_006920_020 0.1526370395 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
11 Hb_000122_230 0.1529681077 - - laccase, putative [Ricinus communis]
12 Hb_001001_070 0.1593663012 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
13 Hb_000251_120 0.1602711455 - - O-acetyltransferase, putative [Ricinus communis]
14 Hb_015807_130 0.1610007822 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
15 Hb_000975_170 0.1613057945 - - PREDICTED: UDP-glucuronic acid decarboxylase 6 isoform X1 [Jatropha curcas]
16 Hb_000005_010 0.1624210856 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
17 Hb_006750_010 0.1626390514 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
18 Hb_002081_020 0.1648002166 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
19 Hb_001959_100 0.165647917 - - ammonium transporter, putative [Ricinus communis]
20 Hb_000684_400 0.1662570566 - - PREDICTED: uncharacterized protein LOC105642159 [Jatropha curcas]

Gene co-expression network

sample Hb_001832_170 Hb_001832_170 Hb_000417_220 Hb_000417_220 Hb_001832_170--Hb_000417_220 Hb_000005_370 Hb_000005_370 Hb_001832_170--Hb_000005_370 Hb_002400_300 Hb_002400_300 Hb_001832_170--Hb_002400_300 Hb_000552_010 Hb_000552_010 Hb_001832_170--Hb_000552_010 Hb_000270_340 Hb_000270_340 Hb_001832_170--Hb_000270_340 Hb_000139_060 Hb_000139_060 Hb_001832_170--Hb_000139_060 Hb_000061_290 Hb_000061_290 Hb_000417_220--Hb_000061_290 Hb_000130_350 Hb_000130_350 Hb_000417_220--Hb_000130_350 Hb_001959_100 Hb_001959_100 Hb_000417_220--Hb_001959_100 Hb_000251_120 Hb_000251_120 Hb_000417_220--Hb_000251_120 Hb_001001_070 Hb_001001_070 Hb_000417_220--Hb_001001_070 Hb_003929_240 Hb_003929_240 Hb_000005_370--Hb_003929_240 Hb_003849_070 Hb_003849_070 Hb_000005_370--Hb_003849_070 Hb_001474_060 Hb_001474_060 Hb_000005_370--Hb_001474_060 Hb_001124_230 Hb_001124_230 Hb_000005_370--Hb_001124_230 Hb_001257_050 Hb_001257_050 Hb_000005_370--Hb_001257_050 Hb_091236_010 Hb_091236_010 Hb_002400_300--Hb_091236_010 Hb_006920_020 Hb_006920_020 Hb_002400_300--Hb_006920_020 Hb_000122_230 Hb_000122_230 Hb_002400_300--Hb_000122_230 Hb_000975_170 Hb_000975_170 Hb_002400_300--Hb_000975_170 Hb_002245_060 Hb_002245_060 Hb_002400_300--Hb_002245_060 Hb_000552_010--Hb_002400_300 Hb_010620_030 Hb_010620_030 Hb_000552_010--Hb_010620_030 Hb_000920_100 Hb_000920_100 Hb_000552_010--Hb_000920_100 Hb_000176_050 Hb_000176_050 Hb_000552_010--Hb_000176_050 Hb_001221_240 Hb_001221_240 Hb_000552_010--Hb_001221_240 Hb_001097_030 Hb_001097_030 Hb_000270_340--Hb_001097_030 Hb_001163_010 Hb_001163_010 Hb_000270_340--Hb_001163_010 Hb_000427_020 Hb_000427_020 Hb_000270_340--Hb_000427_020 Hb_000538_110 Hb_000538_110 Hb_000270_340--Hb_000538_110 Hb_000076_240 Hb_000076_240 Hb_000270_340--Hb_000076_240 Hb_000270_340--Hb_000122_230 Hb_008226_010 Hb_008226_010 Hb_000139_060--Hb_008226_010 Hb_001541_200 Hb_001541_200 Hb_000139_060--Hb_001541_200 Hb_001557_010 Hb_001557_010 Hb_000139_060--Hb_001557_010 Hb_005066_040 Hb_005066_040 Hb_000139_060--Hb_005066_040 Hb_000008_070 Hb_000008_070 Hb_000139_060--Hb_000008_070 Hb_001657_020 Hb_001657_020 Hb_000139_060--Hb_001657_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.378157 2.24192 6.69752 34.4352 1.37078 1.15754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10876 1.70755 0.462951 3.81769 47.1898

CAGE analysis