Hb_001832_180

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig1832: 208934-210356
Sequence    

Annotation

kegg
ID rcu:RCOM_1046780
description hypothetical protein
nr
ID XP_002514107.1
description hypothetical protein RCOM_1046780 [Ricinus communis]
swissprot
ID Q9SZI6
description Putative GATA transcription factor 22 OS=Arabidopsis thaliana GN=GATA22 PE=3 SV=1
trembl
ID B9RK63
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1046780 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17907: 208928-210293
cDNA
(Sanger)
(ID:Location)		 002_D04.ab1: 208983-209922 , 044_F11.ab1: 208983-209922

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001832_180 0.0 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
2 Hb_000841_040 0.0549860104 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
3 Hb_003090_050 0.0611171489 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
4 Hb_000010_380 0.0650404337 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
5 Hb_001135_170 0.069460353 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
6 Hb_001287_070 0.0702117222 - - latex plastidic aldolase-like protein [Hevea brasiliensis]
7 Hb_000282_100 0.0739619135 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
8 Hb_009093_020 0.077943673 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
9 Hb_000111_460 0.079511769 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
10 Hb_004631_020 0.0798343928 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
11 Hb_011068_010 0.0814250353 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
12 Hb_032631_060 0.0817425097 - - Myosin heavy chain, putative [Ricinus communis]
13 Hb_000261_390 0.0845168388 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
14 Hb_001671_130 0.0848494608 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
15 Hb_001046_060 0.0848961627 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
16 Hb_009663_030 0.0861147443 - - Blue copper protein precursor, putative [Ricinus communis]
17 Hb_000805_080 0.0868362941 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
18 Hb_002041_020 0.087246464 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
19 Hb_003337_080 0.087621475 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
20 Hb_000923_030 0.088527172 - - F-box family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001832_180 Hb_001832_180 Hb_000841_040 Hb_000841_040 Hb_001832_180--Hb_000841_040 Hb_003090_050 Hb_003090_050 Hb_001832_180--Hb_003090_050 Hb_000010_380 Hb_000010_380 Hb_001832_180--Hb_000010_380 Hb_001135_170 Hb_001135_170 Hb_001832_180--Hb_001135_170 Hb_001287_070 Hb_001287_070 Hb_001832_180--Hb_001287_070 Hb_000282_100 Hb_000282_100 Hb_001832_180--Hb_000282_100 Hb_000841_040--Hb_003090_050 Hb_009093_020 Hb_009093_020 Hb_000841_040--Hb_009093_020 Hb_000111_460 Hb_000111_460 Hb_000841_040--Hb_000111_460 Hb_011381_120 Hb_011381_120 Hb_000841_040--Hb_011381_120 Hb_004631_020 Hb_004631_020 Hb_000841_040--Hb_004631_020 Hb_003090_050--Hb_000111_460 Hb_000923_030 Hb_000923_030 Hb_003090_050--Hb_000923_030 Hb_003090_050--Hb_001287_070 Hb_008748_050 Hb_008748_050 Hb_003090_050--Hb_008748_050 Hb_003090_050--Hb_000010_380 Hb_000805_080 Hb_000805_080 Hb_000010_380--Hb_000805_080 Hb_001046_060 Hb_001046_060 Hb_000010_380--Hb_001046_060 Hb_000010_380--Hb_001287_070 Hb_032631_060 Hb_032631_060 Hb_000010_380--Hb_032631_060 Hb_011068_010 Hb_011068_010 Hb_000010_380--Hb_011068_010 Hb_003337_080 Hb_003337_080 Hb_000010_380--Hb_003337_080 Hb_001135_170--Hb_004631_020 Hb_000992_090 Hb_000992_090 Hb_001135_170--Hb_000992_090 Hb_011344_030 Hb_011344_030 Hb_001135_170--Hb_011344_030 Hb_023344_040 Hb_023344_040 Hb_001135_170--Hb_023344_040 Hb_000261_390 Hb_000261_390 Hb_001135_170--Hb_000261_390 Hb_001287_070--Hb_011068_010 Hb_001287_070--Hb_001046_060 Hb_005000_120 Hb_005000_120 Hb_001287_070--Hb_005000_120 Hb_001287_070--Hb_000805_080 Hb_001289_050 Hb_001289_050 Hb_000282_100--Hb_001289_050 Hb_000282_100--Hb_009093_020 Hb_000029_390 Hb_000029_390 Hb_000282_100--Hb_000029_390 Hb_000282_100--Hb_000841_040 Hb_000282_100--Hb_004631_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.202791 1.2394 18.7981 3.85275 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0386806 0 0 0.633369 63.4876

CAGE analysis