Hb_001832_190

Information

Type -
Description -
Location Contig1832: 213573-222775
Sequence    

Annotation

kegg
ID rcu:RCOM_1046750
description hypothetical protein
nr
ID XP_002514104.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RK60
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1046750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17909: 217055-218924 , PASA_asmbl_17910: 217137-218924 , PASA_asmbl_17913: 221389-221563
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001832_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006130_010 0.082406264 - - PREDICTED: CTP synthase [Jatropha curcas]
3 Hb_000922_330 0.1044067475 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
4 Hb_014720_160 0.1079044759 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
5 Hb_000085_060 0.1122324416 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
6 Hb_001350_010 0.1231372903 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
7 Hb_000567_360 0.1257012462 - - hypothetical protein CISIN_1g004656mg [Citrus sinensis]
8 Hb_001629_110 0.1269320772 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
9 Hb_001616_080 0.1270111457 - - Oleoyl-acyl carrier protein thioesterase, putative [Ricinus communis]
10 Hb_000003_090 0.1280276614 - - -
11 Hb_002527_030 0.1285009759 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
12 Hb_012675_090 0.129211217 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
13 Hb_000281_100 0.132185137 - - PREDICTED: putative RNA methyltransferase At5g10620 [Jatropha curcas]
14 Hb_000690_130 0.1324390831 - - PREDICTED: uncharacterized protein LOC105631771 [Jatropha curcas]
15 Hb_002174_060 0.1347938087 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
16 Hb_000352_110 0.1352303502 - - DNA topoisomerase II, putative [Ricinus communis]
17 Hb_000997_020 0.1352873991 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
18 Hb_002111_050 0.1361299531 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
19 Hb_003086_070 0.1361795034 - - PREDICTED: iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Jatropha curcas]
20 Hb_004182_040 0.136703073 - - PREDICTED: J domain-containing protein spf31 [Jatropha curcas]

Gene co-expression network

sample Hb_001832_190 Hb_001832_190 Hb_006130_010 Hb_006130_010 Hb_001832_190--Hb_006130_010 Hb_000922_330 Hb_000922_330 Hb_001832_190--Hb_000922_330 Hb_014720_160 Hb_014720_160 Hb_001832_190--Hb_014720_160 Hb_000085_060 Hb_000085_060 Hb_001832_190--Hb_000085_060 Hb_001350_010 Hb_001350_010 Hb_001832_190--Hb_001350_010 Hb_000567_360 Hb_000567_360 Hb_001832_190--Hb_000567_360 Hb_006130_010--Hb_014720_160 Hb_006130_010--Hb_000922_330 Hb_001855_010 Hb_001855_010 Hb_006130_010--Hb_001855_010 Hb_005754_060 Hb_005754_060 Hb_006130_010--Hb_005754_060 Hb_073171_110 Hb_073171_110 Hb_006130_010--Hb_073171_110 Hb_003641_050 Hb_003641_050 Hb_000922_330--Hb_003641_050 Hb_000922_330--Hb_014720_160 Hb_000922_330--Hb_000085_060 Hb_000679_130 Hb_000679_130 Hb_000922_330--Hb_000679_130 Hb_005662_030 Hb_005662_030 Hb_000922_330--Hb_005662_030 Hb_002527_030 Hb_002527_030 Hb_000922_330--Hb_002527_030 Hb_007547_010 Hb_007547_010 Hb_014720_160--Hb_007547_010 Hb_014720_160--Hb_000085_060 Hb_003609_040 Hb_003609_040 Hb_014720_160--Hb_003609_040 Hb_000001_020 Hb_000001_020 Hb_014720_160--Hb_000001_020 Hb_014720_160--Hb_005662_030 Hb_001124_120 Hb_001124_120 Hb_000085_060--Hb_001124_120 Hb_076787_010 Hb_076787_010 Hb_000085_060--Hb_076787_010 Hb_031939_010 Hb_031939_010 Hb_000085_060--Hb_031939_010 Hb_001014_010 Hb_001014_010 Hb_000085_060--Hb_001014_010 Hb_003406_010 Hb_003406_010 Hb_000085_060--Hb_003406_010 Hb_007218_080 Hb_007218_080 Hb_000085_060--Hb_007218_080 Hb_004182_040 Hb_004182_040 Hb_001350_010--Hb_004182_040 Hb_003125_160 Hb_003125_160 Hb_001350_010--Hb_003125_160 Hb_000627_030 Hb_000627_030 Hb_001350_010--Hb_000627_030 Hb_000486_010 Hb_000486_010 Hb_001350_010--Hb_000486_010 Hb_000345_170 Hb_000345_170 Hb_001350_010--Hb_000345_170 Hb_007044_080 Hb_007044_080 Hb_001350_010--Hb_007044_080 Hb_003044_100 Hb_003044_100 Hb_000567_360--Hb_003044_100 Hb_000915_110 Hb_000915_110 Hb_000567_360--Hb_000915_110 Hb_000364_060 Hb_000364_060 Hb_000567_360--Hb_000364_060 Hb_006064_010 Hb_006064_010 Hb_000567_360--Hb_006064_010 Hb_004195_280 Hb_004195_280 Hb_000567_360--Hb_004195_280 Hb_002587_020 Hb_002587_020 Hb_000567_360--Hb_002587_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.18129 0.509945 1.82291 1.32158 6.93471 5.82934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.51835 4.09254 2.92112 1.14781 3.57586

CAGE analysis