Hb_001833_030

Information

Type -
Description -
Location Contig1833: 51793-53752
Sequence    

Annotation

kegg
ID csv:101203928
description uncharacterized LOC101203928
nr
ID BAA22288.1
description polyprotein [Oryza australiensis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O23864
description Polyprotein OS=Oryza australiensis PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001833_030 0.0 - - polyprotein [Oryza australiensis]
2 Hb_015866_010 0.0001486624 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
3 Hb_000127_150 0.0002568243 - - PREDICTED: cytochrome P450 85A1-like [Jatropha curcas]
4 Hb_001216_020 0.0004194349 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
5 Hb_152910_030 0.0005075021 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
6 Hb_031318_010 0.0005100268 - - -
7 Hb_001980_040 0.0022523757 - - -
8 Hb_001102_280 0.0023339197 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
9 Hb_003793_040 0.0036531285 - - hypothetical protein CARUB_v10021783mg [Capsella rubella]
10 Hb_105251_010 0.005108221 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_186064_010 0.0053437726 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_033165_010 0.0059804741 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_005465_050 0.0105646866 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
14 Hb_093161_010 0.0209991178 - - -
15 Hb_056506_090 0.022253236 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_153924_010 0.0230046549 - - hypothetical protein JCGZ_22941 [Jatropha curcas]
17 Hb_174258_010 0.0274024637 - - PREDICTED: uncharacterized protein LOC105631548 [Jatropha curcas]
18 Hb_000312_030 0.0299475928 - - PREDICTED: uncharacterized protein LOC104888072 [Beta vulgaris subsp. vulgaris]
19 Hb_067634_010 0.0302225725 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
20 Hb_001755_010 0.0337099904 - - PREDICTED: uncharacterized protein LOC105767245 [Gossypium raimondii]

Gene co-expression network

sample Hb_001833_030 Hb_001833_030 Hb_015866_010 Hb_015866_010 Hb_001833_030--Hb_015866_010 Hb_000127_150 Hb_000127_150 Hb_001833_030--Hb_000127_150 Hb_001216_020 Hb_001216_020 Hb_001833_030--Hb_001216_020 Hb_152910_030 Hb_152910_030 Hb_001833_030--Hb_152910_030 Hb_031318_010 Hb_031318_010 Hb_001833_030--Hb_031318_010 Hb_001980_040 Hb_001980_040 Hb_001833_030--Hb_001980_040 Hb_015866_010--Hb_000127_150 Hb_015866_010--Hb_152910_030 Hb_015866_010--Hb_031318_010 Hb_015866_010--Hb_001216_020 Hb_001102_280 Hb_001102_280 Hb_015866_010--Hb_001102_280 Hb_000127_150--Hb_152910_030 Hb_000127_150--Hb_031318_010 Hb_000127_150--Hb_001216_020 Hb_000127_150--Hb_001102_280 Hb_001216_020--Hb_152910_030 Hb_001216_020--Hb_031318_010 Hb_001216_020--Hb_001980_040 Hb_152910_030--Hb_031318_010 Hb_152910_030--Hb_001102_280 Hb_031318_010--Hb_001102_280 Hb_001980_040--Hb_015866_010 Hb_001980_040--Hb_000127_150 Hb_001980_040--Hb_152910_030 Hb_001980_040--Hb_031318_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0195228 0.0511721

CAGE analysis