Hb_001838_050

Information

Type -
Description -
Location Contig1838: 97733-99944
Sequence    

Annotation

kegg
ID pmum:103337636
description probable receptor-like protein kinase At2g23200
nr
ID KJB43829.1
description hypothetical protein B456_007G218500 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID F6HJU2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1542g00020 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at5g24010

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001838_050 0.0 - - hypothetical protein B456_007G218500 [Gossypium raimondii]
2 Hb_004574_010 0.0791127785 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
3 Hb_003031_030 0.0792766452 - - hypothetical protein JCGZ_21288 [Jatropha curcas]
4 Hb_000237_150 0.0920553314 - - Epoxide hydrolase 2 [Morus notabilis]
5 Hb_088916_010 0.0935142866 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
6 Hb_000616_050 0.0956315677 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
7 Hb_001693_020 0.104894104 - - zinc finger protein, putative [Ricinus communis]
8 Hb_002150_010 0.1081411738 - - hypothetical protein POPTR_0001s10240g [Populus trichocarpa]
9 Hb_001405_100 0.1134321215 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
10 Hb_019229_020 0.1147500095 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
11 Hb_003399_030 0.1175797491 - - PREDICTED: isoflavone 2'-hydroxylase-like [Jatropha curcas]
12 Hb_002671_110 0.1202744713 - - PREDICTED: remorin-like [Jatropha curcas]
13 Hb_142332_010 0.1207561437 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
14 Hb_000852_050 0.1215396127 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
15 Hb_000984_080 0.1226121741 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
16 Hb_001135_290 0.1252835326 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
17 Hb_012395_070 0.1269705082 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
18 Hb_012019_020 0.1284455417 - - Nonspecific lipid-transfer protein precursor, putative [Ricinus communis]
19 Hb_001678_030 0.129183097 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
20 Hb_002553_120 0.129239393 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]

Gene co-expression network

sample Hb_001838_050 Hb_001838_050 Hb_004574_010 Hb_004574_010 Hb_001838_050--Hb_004574_010 Hb_003031_030 Hb_003031_030 Hb_001838_050--Hb_003031_030 Hb_000237_150 Hb_000237_150 Hb_001838_050--Hb_000237_150 Hb_088916_010 Hb_088916_010 Hb_001838_050--Hb_088916_010 Hb_000616_050 Hb_000616_050 Hb_001838_050--Hb_000616_050 Hb_001693_020 Hb_001693_020 Hb_001838_050--Hb_001693_020 Hb_004574_010--Hb_003031_030 Hb_012395_070 Hb_012395_070 Hb_004574_010--Hb_012395_070 Hb_002805_150 Hb_002805_150 Hb_004574_010--Hb_002805_150 Hb_000286_190 Hb_000286_190 Hb_004574_010--Hb_000286_190 Hb_004574_010--Hb_088916_010 Hb_003031_030--Hb_000616_050 Hb_003031_030--Hb_002805_150 Hb_003031_030--Hb_012395_070 Hb_012753_200 Hb_012753_200 Hb_003031_030--Hb_012753_200 Hb_000238_060 Hb_000238_060 Hb_000237_150--Hb_000238_060 Hb_000852_050 Hb_000852_050 Hb_000237_150--Hb_000852_050 Hb_001405_100 Hb_001405_100 Hb_000237_150--Hb_001405_100 Hb_000237_150--Hb_000616_050 Hb_000649_030 Hb_000649_030 Hb_000237_150--Hb_000649_030 Hb_002671_110 Hb_002671_110 Hb_000237_150--Hb_002671_110 Hb_008140_060 Hb_008140_060 Hb_088916_010--Hb_008140_060 Hb_000740_130 Hb_000740_130 Hb_088916_010--Hb_000740_130 Hb_000920_360 Hb_000920_360 Hb_088916_010--Hb_000920_360 Hb_001105_200 Hb_001105_200 Hb_088916_010--Hb_001105_200 Hb_182021_010 Hb_182021_010 Hb_088916_010--Hb_182021_010 Hb_019229_020 Hb_019229_020 Hb_000616_050--Hb_019229_020 Hb_000616_050--Hb_000649_030 Hb_000616_050--Hb_000852_050 Hb_002553_120 Hb_002553_120 Hb_001693_020--Hb_002553_120 Hb_161393_010 Hb_161393_010 Hb_001693_020--Hb_161393_010 Hb_005653_020 Hb_005653_020 Hb_001693_020--Hb_005653_020 Hb_002081_040 Hb_002081_040 Hb_001693_020--Hb_002081_040 Hb_006446_060 Hb_006446_060 Hb_001693_020--Hb_006446_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0276005 1.8698 0.213635 0.62514 0 0.0205681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0198978 0.0376222 4.32673 0.251502

CAGE analysis