Hb_001839_020

Information

Type -
Description -
Location Contig1839: 52239-55345
Sequence    

Annotation

kegg
ID rcu:RCOM_1687070
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_012086875.1
description PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
swissprot
ID Q9CAD5
description Mitogen-activated protein kinase kinase kinase YODA OS=Arabidopsis thaliana GN=YDA PE=1 SV=1
trembl
ID A0A067JRH0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20574 PE=4 SV=1
Gene Ontology
ID GO:0016740
description mitogen-activated protein kinase kinase kinase yoda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17961: 51510-51955 , PASA_asmbl_17962: 53125-53596
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001839_020 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
2 Hb_000136_030 0.1009549165 - - serine/arginine rich splicing factor, putative [Ricinus communis]
3 Hb_015292_040 0.1034893447 - - PREDICTED: myb-like protein X [Jatropha curcas]
4 Hb_000663_020 0.1086803066 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
5 Hb_001322_020 0.1088712783 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
6 Hb_077026_010 0.1103528436 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
7 Hb_005731_110 0.112099633 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
8 Hb_000959_220 0.1133874918 - - zinc finger protein, putative [Ricinus communis]
9 Hb_001951_200 0.1166888825 - - PREDICTED: cold-regulated 413 inner membrane protein 1, chloroplastic-like [Jatropha curcas]
10 Hb_005389_100 0.1186632291 - - PREDICTED: methyltransferase-like protein 5 isoform X2 [Jatropha curcas]
11 Hb_006569_040 0.1206189397 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
12 Hb_065755_030 0.1227591952 - - -
13 Hb_000211_040 0.1251151759 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
14 Hb_000364_100 0.1252372394 - - PREDICTED: uncharacterized protein LOC105639739 [Jatropha curcas]
15 Hb_000847_080 0.1261698938 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
16 Hb_000532_100 0.1274074535 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
17 Hb_001930_030 0.1283228496 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
18 Hb_000436_100 0.1283590886 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
19 Hb_044155_010 0.1292713759 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
20 Hb_000640_160 0.1301886368 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_001839_020 Hb_001839_020 Hb_000136_030 Hb_000136_030 Hb_001839_020--Hb_000136_030 Hb_015292_040 Hb_015292_040 Hb_001839_020--Hb_015292_040 Hb_000663_020 Hb_000663_020 Hb_001839_020--Hb_000663_020 Hb_001322_020 Hb_001322_020 Hb_001839_020--Hb_001322_020 Hb_077026_010 Hb_077026_010 Hb_001839_020--Hb_077026_010 Hb_005731_110 Hb_005731_110 Hb_001839_020--Hb_005731_110 Hb_002942_210 Hb_002942_210 Hb_000136_030--Hb_002942_210 Hb_139002_010 Hb_139002_010 Hb_000136_030--Hb_139002_010 Hb_002042_030 Hb_002042_030 Hb_000136_030--Hb_002042_030 Hb_002814_110 Hb_002814_110 Hb_000136_030--Hb_002814_110 Hb_005288_080 Hb_005288_080 Hb_000136_030--Hb_005288_080 Hb_004994_080 Hb_004994_080 Hb_015292_040--Hb_004994_080 Hb_000211_040 Hb_000211_040 Hb_015292_040--Hb_000211_040 Hb_001930_030 Hb_001930_030 Hb_015292_040--Hb_001930_030 Hb_015292_040--Hb_000663_020 Hb_000364_100 Hb_000364_100 Hb_015292_040--Hb_000364_100 Hb_000663_020--Hb_005731_110 Hb_002218_020 Hb_002218_020 Hb_000663_020--Hb_002218_020 Hb_001195_270 Hb_001195_270 Hb_000663_020--Hb_001195_270 Hb_000663_020--Hb_077026_010 Hb_005162_110 Hb_005162_110 Hb_000663_020--Hb_005162_110 Hb_003506_030 Hb_003506_030 Hb_000663_020--Hb_003506_030 Hb_000959_220 Hb_000959_220 Hb_001322_020--Hb_000959_220 Hb_003470_040 Hb_003470_040 Hb_001322_020--Hb_003470_040 Hb_029695_080 Hb_029695_080 Hb_001322_020--Hb_029695_080 Hb_000062_360 Hb_000062_360 Hb_001322_020--Hb_000062_360 Hb_001322_020--Hb_003506_030 Hb_014231_020 Hb_014231_020 Hb_001322_020--Hb_014231_020 Hb_000847_080 Hb_000847_080 Hb_077026_010--Hb_000847_080 Hb_002874_180 Hb_002874_180 Hb_077026_010--Hb_002874_180 Hb_021943_080 Hb_021943_080 Hb_077026_010--Hb_021943_080 Hb_000120_210 Hb_000120_210 Hb_077026_010--Hb_000120_210 Hb_004096_240 Hb_004096_240 Hb_077026_010--Hb_004096_240 Hb_000640_160 Hb_000640_160 Hb_005731_110--Hb_000640_160 Hb_005731_110--Hb_000959_220 Hb_005731_110--Hb_005162_110 Hb_003225_020 Hb_003225_020 Hb_005731_110--Hb_003225_020 Hb_065755_030 Hb_065755_030 Hb_005731_110--Hb_065755_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.87962 5.7776 13.2118 4.45502 7.91065 3.60137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.95019 3.36584 1.34853 2.24839 5.93198

CAGE analysis