Hb_001840_070

Information

Type -
Description -
Location Contig1840: 116564-120307
Sequence    

Annotation

kegg
ID rcu:RCOM_0814180
description DNA binding protein, putative
nr
ID XP_002518807.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RY40
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0814180 PE=4 SV=1
Gene Ontology
ID GO:0005886
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18023: 116860-120091 , PASA_asmbl_18024: 120115-133017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001840_070 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_039253_010 0.1159513473 - - PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X2 [Jatropha curcas]
3 Hb_001102_150 0.1166467937 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase-like isoform X1 [Jatropha curcas]
4 Hb_002805_070 0.1223901501 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X2 [Jatropha curcas]
5 Hb_000271_090 0.1229708727 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_006642_040 0.125688424 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
7 Hb_000038_080 0.1265882115 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
8 Hb_011716_020 0.1270776205 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
9 Hb_011689_020 0.1302865792 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_002027_270 0.1309636858 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
11 Hb_000421_210 0.1310743489 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007026_040 0.1331387948 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
13 Hb_001691_120 0.134752317 desease resistance Gene Name: AAA PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
14 Hb_002600_140 0.1354501967 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
15 Hb_000236_310 0.1357743962 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
16 Hb_006157_020 0.1374493263 - - PREDICTED: nucleolin 1-like isoform X2 [Jatropha curcas]
17 Hb_003916_010 0.1380936199 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
18 Hb_162603_010 0.1393889275 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_000031_220 0.140048713 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
20 Hb_005679_050 0.1413599042 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_001840_070 Hb_001840_070 Hb_039253_010 Hb_039253_010 Hb_001840_070--Hb_039253_010 Hb_001102_150 Hb_001102_150 Hb_001840_070--Hb_001102_150 Hb_002805_070 Hb_002805_070 Hb_001840_070--Hb_002805_070 Hb_000271_090 Hb_000271_090 Hb_001840_070--Hb_000271_090 Hb_006642_040 Hb_006642_040 Hb_001840_070--Hb_006642_040 Hb_000038_080 Hb_000038_080 Hb_001840_070--Hb_000038_080 Hb_002023_020 Hb_002023_020 Hb_039253_010--Hb_002023_020 Hb_039253_010--Hb_002805_070 Hb_000364_150 Hb_000364_150 Hb_039253_010--Hb_000364_150 Hb_003656_140 Hb_003656_140 Hb_039253_010--Hb_003656_140 Hb_039253_010--Hb_001102_150 Hb_012286_050 Hb_012286_050 Hb_039253_010--Hb_012286_050 Hb_001102_150--Hb_002805_070 Hb_004732_020 Hb_004732_020 Hb_001102_150--Hb_004732_020 Hb_006114_030 Hb_006114_030 Hb_001102_150--Hb_006114_030 Hb_009117_030 Hb_009117_030 Hb_001102_150--Hb_009117_030 Hb_000424_240 Hb_000424_240 Hb_001102_150--Hb_000424_240 Hb_090804_010 Hb_090804_010 Hb_002805_070--Hb_090804_010 Hb_011689_020 Hb_011689_020 Hb_002805_070--Hb_011689_020 Hb_005839_060 Hb_005839_060 Hb_002805_070--Hb_005839_060 Hb_033834_060 Hb_033834_060 Hb_002805_070--Hb_033834_060 Hb_006157_020 Hb_006157_020 Hb_000271_090--Hb_006157_020 Hb_004429_100 Hb_004429_100 Hb_000271_090--Hb_004429_100 Hb_031284_040 Hb_031284_040 Hb_000271_090--Hb_031284_040 Hb_000084_120 Hb_000084_120 Hb_000271_090--Hb_000084_120 Hb_000083_160 Hb_000083_160 Hb_000271_090--Hb_000083_160 Hb_000271_090--Hb_033834_060 Hb_000497_110 Hb_000497_110 Hb_006642_040--Hb_000497_110 Hb_007943_130 Hb_007943_130 Hb_006642_040--Hb_007943_130 Hb_015175_020 Hb_015175_020 Hb_006642_040--Hb_015175_020 Hb_011671_180 Hb_011671_180 Hb_006642_040--Hb_011671_180 Hb_001009_170 Hb_001009_170 Hb_006642_040--Hb_001009_170 Hb_023001_060 Hb_023001_060 Hb_006642_040--Hb_023001_060 Hb_000236_310 Hb_000236_310 Hb_000038_080--Hb_000236_310 Hb_005731_120 Hb_005731_120 Hb_000038_080--Hb_005731_120 Hb_000785_080 Hb_000785_080 Hb_000038_080--Hb_000785_080 Hb_004934_070 Hb_004934_070 Hb_000038_080--Hb_004934_070 Hb_000031_220 Hb_000031_220 Hb_000038_080--Hb_000031_220 Hb_099878_030 Hb_099878_030 Hb_000038_080--Hb_099878_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3056 4.68756 2.68818 10.9058 7.97176 26.3845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.93295 5.95479 8.73351 18.6152 4.64843

CAGE analysis