Hb_001840_080

Information

Type -
Description -
Location Contig1840: 139947-151585
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14370g
description POPTRDRAFT_657075; hypothetical protein
nr
ID XP_002311572.1
description hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
swissprot
ID Q0PGJ6
description Aldo-keto reductase family 4 member C9 OS=Arabidopsis thaliana GN=AKR4C9 PE=1 SV=1
trembl
ID B9HJQ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s14370g PE=4 SV=1
Gene Ontology
ID GO:0016491
description aldo-keto reductase family 4 member c10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18025: 140058-151416
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001840_080 0.0 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
2 Hb_000120_800 0.0687258674 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
3 Hb_001047_020 0.077607476 - - -
4 Hb_002215_050 0.0796825319 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
5 Hb_003638_140 0.0812452338 - - protein binding protein, putative [Ricinus communis]
6 Hb_000749_150 0.0833025943 - - -
7 Hb_005306_110 0.0849132205 - - casein kinase, putative [Ricinus communis]
8 Hb_009111_050 0.0850131197 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
9 Hb_001030_120 0.0853821868 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
10 Hb_000442_160 0.085464754 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
11 Hb_028639_060 0.0857521443 - - transporter, putative [Ricinus communis]
12 Hb_001295_020 0.086236575 - - Uncharacterized protein TCM_027312 [Theobroma cacao]
13 Hb_000120_500 0.0863278505 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
14 Hb_015026_120 0.0894048696 - - hypothetical protein TRIUR3_03502 [Triticum urartu]
15 Hb_012340_030 0.0917585168 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
16 Hb_006447_010 0.0919492322 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
17 Hb_000017_120 0.0927115355 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
18 Hb_000190_140 0.0939110838 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
19 Hb_039837_010 0.0946893257 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
20 Hb_001823_100 0.0955819872 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]

Gene co-expression network

sample Hb_001840_080 Hb_001840_080 Hb_000120_800 Hb_000120_800 Hb_001840_080--Hb_000120_800 Hb_001047_020 Hb_001047_020 Hb_001840_080--Hb_001047_020 Hb_002215_050 Hb_002215_050 Hb_001840_080--Hb_002215_050 Hb_003638_140 Hb_003638_140 Hb_001840_080--Hb_003638_140 Hb_000749_150 Hb_000749_150 Hb_001840_080--Hb_000749_150 Hb_005306_110 Hb_005306_110 Hb_001840_080--Hb_005306_110 Hb_000120_800--Hb_005306_110 Hb_001017_040 Hb_001017_040 Hb_000120_800--Hb_001017_040 Hb_000134_090 Hb_000134_090 Hb_000120_800--Hb_000134_090 Hb_000009_170 Hb_000009_170 Hb_000120_800--Hb_000009_170 Hb_022137_060 Hb_022137_060 Hb_000120_800--Hb_022137_060 Hb_001047_020--Hb_002215_050 Hb_001047_020--Hb_000120_800 Hb_002686_270 Hb_002686_270 Hb_001047_020--Hb_002686_270 Hb_000446_090 Hb_000446_090 Hb_001047_020--Hb_000446_090 Hb_004046_010 Hb_004046_010 Hb_001047_020--Hb_004046_010 Hb_001369_060 Hb_001369_060 Hb_002215_050--Hb_001369_060 Hb_002215_050--Hb_003638_140 Hb_033491_010 Hb_033491_010 Hb_002215_050--Hb_033491_010 Hb_000784_090 Hb_000784_090 Hb_002215_050--Hb_000784_090 Hb_001214_130 Hb_001214_130 Hb_002215_050--Hb_001214_130 Hb_024714_030 Hb_024714_030 Hb_002215_050--Hb_024714_030 Hb_003638_140--Hb_001369_060 Hb_003638_140--Hb_024714_030 Hb_011496_010 Hb_011496_010 Hb_003638_140--Hb_011496_010 Hb_000608_120 Hb_000608_120 Hb_003638_140--Hb_000608_120 Hb_001804_060 Hb_001804_060 Hb_003638_140--Hb_001804_060 Hb_004204_200 Hb_004204_200 Hb_000749_150--Hb_004204_200 Hb_010608_010 Hb_010608_010 Hb_000749_150--Hb_010608_010 Hb_000803_150 Hb_000803_150 Hb_000749_150--Hb_000803_150 Hb_000165_030 Hb_000165_030 Hb_000749_150--Hb_000165_030 Hb_000204_040 Hb_000204_040 Hb_000749_150--Hb_000204_040 Hb_000120_500 Hb_000120_500 Hb_000749_150--Hb_000120_500 Hb_033153_050 Hb_033153_050 Hb_005306_110--Hb_033153_050 Hb_001584_330 Hb_001584_330 Hb_005306_110--Hb_001584_330 Hb_001623_420 Hb_001623_420 Hb_005306_110--Hb_001623_420 Hb_000943_070 Hb_000943_070 Hb_005306_110--Hb_000943_070 Hb_000120_950 Hb_000120_950 Hb_005306_110--Hb_000120_950 Hb_003642_060 Hb_003642_060 Hb_005306_110--Hb_003642_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
98.2183 23.7453 17.778 16.7153 51.5093 104.837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.407 47.6214 58.6326 23.7788 11.234

CAGE analysis