Hb_001842_020

Information

Type -
Description -
Location Contig1842: 94687-96868
Sequence    

Annotation

kegg
ID pop:POPTR_0004s19750g
description hypothetical protein
nr
ID XP_012075874.1
description PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Jatropha curcas]
swissprot
ID P41893
description Low molecular weight phosphotyrosine protein phosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=stp1 PE=2 SV=1
trembl
ID A0A067KIB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10913 PE=4 SV=1
Gene Ontology
ID GO:0004725
description low molecular weight phosphotyrosine protein phosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18041: 94102-94528 , PASA_asmbl_18042: 95073-96889
cDNA
(Sanger)
(ID:Location)		 007_F11.ab1: 95111-96889 , 036_M10.ab1: 95111-96889

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001842_020 0.0 - - PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Jatropha curcas]
2 Hb_016219_030 0.1115888995 - - cytochrome P450, putative [Ricinus communis]
3 Hb_000560_040 0.1186634404 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
4 Hb_007904_040 0.1206319536 - - PREDICTED: uncharacterized protein LOC105644727 [Jatropha curcas]
5 Hb_002759_120 0.1220471144 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002053_010 0.1227406991 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
7 Hb_000388_060 0.1228951171 - - fructokinase [Manihot esculenta]
8 Hb_004672_020 0.1241399379 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
9 Hb_000032_140 0.1241490904 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000397_150 0.1255241357 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
11 Hb_000566_010 0.1289403391 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
12 Hb_000175_050 0.1312585379 - - -
13 Hb_001789_200 0.1324240945 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
14 Hb_001619_060 0.1326340667 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
15 Hb_000438_140 0.1330548818 - - hypothetical protein CISIN_1g018088mg [Citrus sinensis]
16 Hb_011310_180 0.1344093887 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
17 Hb_001322_230 0.1352538428 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
18 Hb_001675_140 0.1433452918 - - hypothetical protein L484_026216 [Morus notabilis]
19 Hb_000096_190 0.1443102252 - - unknown [Lotus japonicus]
20 Hb_001105_040 0.1445201233 - - PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001842_020 Hb_001842_020 Hb_016219_030 Hb_016219_030 Hb_001842_020--Hb_016219_030 Hb_000560_040 Hb_000560_040 Hb_001842_020--Hb_000560_040 Hb_007904_040 Hb_007904_040 Hb_001842_020--Hb_007904_040 Hb_002759_120 Hb_002759_120 Hb_001842_020--Hb_002759_120 Hb_002053_010 Hb_002053_010 Hb_001842_020--Hb_002053_010 Hb_000388_060 Hb_000388_060 Hb_001842_020--Hb_000388_060 Hb_000189_450 Hb_000189_450 Hb_016219_030--Hb_000189_450 Hb_000438_140 Hb_000438_140 Hb_016219_030--Hb_000438_140 Hb_016219_030--Hb_002053_010 Hb_001789_200 Hb_001789_200 Hb_016219_030--Hb_001789_200 Hb_000032_500 Hb_000032_500 Hb_016219_030--Hb_000032_500 Hb_001105_040 Hb_001105_040 Hb_016219_030--Hb_001105_040 Hb_002529_090 Hb_002529_090 Hb_000560_040--Hb_002529_090 Hb_055690_010 Hb_055690_010 Hb_000560_040--Hb_055690_010 Hb_003440_020 Hb_003440_020 Hb_000560_040--Hb_003440_020 Hb_002075_030 Hb_002075_030 Hb_000560_040--Hb_002075_030 Hb_032631_070 Hb_032631_070 Hb_000560_040--Hb_032631_070 Hb_000560_040--Hb_002053_010 Hb_000175_050 Hb_000175_050 Hb_007904_040--Hb_000175_050 Hb_000032_140 Hb_000032_140 Hb_007904_040--Hb_000032_140 Hb_004672_020 Hb_004672_020 Hb_007904_040--Hb_004672_020 Hb_000032_400 Hb_000032_400 Hb_007904_040--Hb_000032_400 Hb_002783_150 Hb_002783_150 Hb_007904_040--Hb_002783_150 Hb_003752_090 Hb_003752_090 Hb_002759_120--Hb_003752_090 Hb_000096_190 Hb_000096_190 Hb_002759_120--Hb_000096_190 Hb_000566_010 Hb_000566_010 Hb_002759_120--Hb_000566_010 Hb_042083_040 Hb_042083_040 Hb_002759_120--Hb_042083_040 Hb_158092_100 Hb_158092_100 Hb_002759_120--Hb_158092_100 Hb_003994_080 Hb_003994_080 Hb_002759_120--Hb_003994_080 Hb_002053_010--Hb_001789_200 Hb_008695_200 Hb_008695_200 Hb_002053_010--Hb_008695_200 Hb_001369_790 Hb_001369_790 Hb_002053_010--Hb_001369_790 Hb_004440_060 Hb_004440_060 Hb_002053_010--Hb_004440_060 Hb_000086_080 Hb_000086_080 Hb_002053_010--Hb_000086_080 Hb_000388_060--Hb_001789_200 Hb_000388_060--Hb_002053_010 Hb_008147_080 Hb_008147_080 Hb_000388_060--Hb_008147_080 Hb_000983_070 Hb_000983_070 Hb_000388_060--Hb_000983_070 Hb_001124_180 Hb_001124_180 Hb_000388_060--Hb_001124_180 Hb_001898_180 Hb_001898_180 Hb_000388_060--Hb_001898_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51472 5.34053 14.7685 16.7668 1.49696 2.4874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.39398 8.14527 1.65992 5.67435 23.0353

CAGE analysis