Hb_001842_040

Information

Type -
Description -
Location Contig1842: 103403-104115
Sequence    

Annotation

kegg
ID fve:101312225
description uncharacterized protein LOC101312225
nr
ID XP_006592740.1
description PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
swissprot
ID -
description -
trembl
ID I1LTS8
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0005746
description cytochrome-c carriers

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18045: 102368-103980
cDNA
(Sanger)
(ID:Location)		 001_O06.ab1: 102373-103960 , 024_M19.ab1: 102375-103911 , 026_J02.ab1: 102373-103921 , 051_L01.ab1: 102364-103960 , 053_K19.ab1: 102389-103979

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001842_040 0.0 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
2 Hb_000441_190 0.0512286545 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
3 Hb_001461_010 0.0682108661 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
4 Hb_005278_020 0.0781135771 - - PREDICTED: sorcin-like [Jatropha curcas]
5 Hb_007100_030 0.0782789646 - - 40S ribosomal protein S17B [Hevea brasiliensis]
6 Hb_000283_110 0.0790200075 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
7 Hb_003893_050 0.080370282 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
8 Hb_000029_200 0.084186385 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
9 Hb_002864_050 0.0842489075 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
10 Hb_000302_220 0.0845502109 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
11 Hb_000102_020 0.0865894999 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
12 Hb_002830_020 0.0866243854 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_000023_340 0.0878659915 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
14 Hb_000699_160 0.0881342337 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
15 Hb_005063_050 0.088532072 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
16 Hb_010174_020 0.0889683886 - - protein binding protein, putative [Ricinus communis]
17 Hb_001140_060 0.0892548757 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
18 Hb_002631_020 0.0900705398 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
19 Hb_012022_120 0.090666134 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
20 Hb_003671_020 0.0909854493 - - calcineurin B, putative [Ricinus communis]

Gene co-expression network

sample Hb_001842_040 Hb_001842_040 Hb_000441_190 Hb_000441_190 Hb_001842_040--Hb_000441_190 Hb_001461_010 Hb_001461_010 Hb_001842_040--Hb_001461_010 Hb_005278_020 Hb_005278_020 Hb_001842_040--Hb_005278_020 Hb_007100_030 Hb_007100_030 Hb_001842_040--Hb_007100_030 Hb_000283_110 Hb_000283_110 Hb_001842_040--Hb_000283_110 Hb_003893_050 Hb_003893_050 Hb_001842_040--Hb_003893_050 Hb_000441_190--Hb_003893_050 Hb_000441_190--Hb_000283_110 Hb_000441_190--Hb_001461_010 Hb_003994_040 Hb_003994_040 Hb_000441_190--Hb_003994_040 Hb_000023_340 Hb_000023_340 Hb_000441_190--Hb_000023_340 Hb_004374_140 Hb_004374_140 Hb_001461_010--Hb_004374_140 Hb_008544_010 Hb_008544_010 Hb_001461_010--Hb_008544_010 Hb_010042_010 Hb_010042_010 Hb_001461_010--Hb_010042_010 Hb_002631_020 Hb_002631_020 Hb_001461_010--Hb_002631_020 Hb_000985_060 Hb_000985_060 Hb_001461_010--Hb_000985_060 Hb_026314_020 Hb_026314_020 Hb_005278_020--Hb_026314_020 Hb_012022_120 Hb_012022_120 Hb_005278_020--Hb_012022_120 Hb_017413_010 Hb_017413_010 Hb_005278_020--Hb_017413_010 Hb_001016_030 Hb_001016_030 Hb_005278_020--Hb_001016_030 Hb_004784_020 Hb_004784_020 Hb_005278_020--Hb_004784_020 Hb_007100_030--Hb_000441_190 Hb_000963_180 Hb_000963_180 Hb_007100_030--Hb_000963_180 Hb_001141_030 Hb_001141_030 Hb_007100_030--Hb_001141_030 Hb_138585_060 Hb_138585_060 Hb_007100_030--Hb_138585_060 Hb_003203_040 Hb_003203_040 Hb_007100_030--Hb_003203_040 Hb_003226_210 Hb_003226_210 Hb_000283_110--Hb_003226_210 Hb_000283_110--Hb_003893_050 Hb_002431_050 Hb_002431_050 Hb_000283_110--Hb_002431_050 Hb_001638_260 Hb_001638_260 Hb_000283_110--Hb_001638_260 Hb_000029_200 Hb_000029_200 Hb_000283_110--Hb_000029_200 Hb_005063_050 Hb_005063_050 Hb_003893_050--Hb_005063_050 Hb_003893_050--Hb_002431_050 Hb_003893_050--Hb_003203_040 Hb_010672_060 Hb_010672_060 Hb_003893_050--Hb_010672_060 Hb_003893_050--Hb_000029_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
135.139 44.0605 82.1382 180.35 104.938 174.29
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
227.371 411.971 253.352 74.2695 82.2183

CAGE analysis