Hb_001842_100

Information

Type rubber biosynthesis
Description Gene Name: Dimethyallyltransferase
Location Contig1842: 147630-152081
Sequence    

Annotation

kegg
ID rcu:RCOM_0793270
description tRNA delta(2)-isopentenylpyrophosphate transferase, putative (EC:2.5.1.8)
nr
ID KDP34700.1
description hypothetical protein JCGZ_10905 [Jatropha curcas]
swissprot
ID Q9ZUX7
description tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2 PE=1 SV=2
trembl
ID A0A067KR18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10905 PE=3 SV=1
Gene Ontology
ID GO:0005524
description trna dimethylallyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18050: 148057-152168 , PASA_asmbl_18051: 149895-150078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001842_100 0.0 rubber biosynthesis Gene Name: Dimethyallyltransferase hypothetical protein JCGZ_10905 [Jatropha curcas]
2 Hb_005291_030 0.0846689533 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
3 Hb_001287_080 0.087728935 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002271_020 0.0880900389 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
5 Hb_001221_100 0.0883034187 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
6 Hb_002893_050 0.0889369335 - - hypothetical protein POPTR_0006s26510g [Populus trichocarpa]
7 Hb_000086_380 0.0914460623 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
8 Hb_000003_080 0.0934477251 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
9 Hb_001357_150 0.0951512325 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
10 Hb_020581_010 0.0955390631 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000116_440 0.0972713346 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
12 Hb_000272_020 0.0972871901 - - oxidoreductase, putative [Ricinus communis]
13 Hb_017224_030 0.1011986375 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
14 Hb_000334_280 0.102915595 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
15 Hb_002303_070 0.103400058 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
16 Hb_000795_060 0.1043062657 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
17 Hb_005730_120 0.10468134 - - PREDICTED: protein WHI4 [Jatropha curcas]
18 Hb_000059_330 0.1061550699 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
19 Hb_003428_030 0.1065460932 - - tRNA, putative [Ricinus communis]
20 Hb_002473_130 0.1087856071 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001842_100 Hb_001842_100 Hb_005291_030 Hb_005291_030 Hb_001842_100--Hb_005291_030 Hb_001287_080 Hb_001287_080 Hb_001842_100--Hb_001287_080 Hb_002271_020 Hb_002271_020 Hb_001842_100--Hb_002271_020 Hb_001221_100 Hb_001221_100 Hb_001842_100--Hb_001221_100 Hb_002893_050 Hb_002893_050 Hb_001842_100--Hb_002893_050 Hb_000086_380 Hb_000086_380 Hb_001842_100--Hb_000086_380 Hb_000030_190 Hb_000030_190 Hb_005291_030--Hb_000030_190 Hb_001638_170 Hb_001638_170 Hb_005291_030--Hb_001638_170 Hb_001489_150 Hb_001489_150 Hb_005291_030--Hb_001489_150 Hb_005291_030--Hb_002271_020 Hb_002303_070 Hb_002303_070 Hb_005291_030--Hb_002303_070 Hb_002473_130 Hb_002473_130 Hb_005291_030--Hb_002473_130 Hb_001287_080--Hb_002271_020 Hb_143398_010 Hb_143398_010 Hb_001287_080--Hb_143398_010 Hb_001287_080--Hb_005291_030 Hb_001357_150 Hb_001357_150 Hb_001287_080--Hb_001357_150 Hb_033594_120 Hb_033594_120 Hb_001287_080--Hb_033594_120 Hb_007451_010 Hb_007451_010 Hb_001287_080--Hb_007451_010 Hb_002271_020--Hb_002473_130 Hb_002271_020--Hb_143398_010 Hb_005489_060 Hb_005489_060 Hb_002271_020--Hb_005489_060 Hb_001279_150 Hb_001279_150 Hb_002271_020--Hb_001279_150 Hb_001221_100--Hb_005291_030 Hb_001221_100--Hb_002303_070 Hb_005730_120 Hb_005730_120 Hb_001221_100--Hb_005730_120 Hb_010417_080 Hb_010417_080 Hb_001221_100--Hb_010417_080 Hb_024071_020 Hb_024071_020 Hb_001221_100--Hb_024071_020 Hb_003126_050 Hb_003126_050 Hb_001221_100--Hb_003126_050 Hb_000610_050 Hb_000610_050 Hb_002893_050--Hb_000610_050 Hb_002893_050--Hb_024071_020 Hb_007875_030 Hb_007875_030 Hb_002893_050--Hb_007875_030 Hb_001140_370 Hb_001140_370 Hb_002893_050--Hb_001140_370 Hb_000342_100 Hb_000342_100 Hb_002893_050--Hb_000342_100 Hb_000217_030 Hb_000217_030 Hb_002893_050--Hb_000217_030 Hb_004310_130 Hb_004310_130 Hb_000086_380--Hb_004310_130 Hb_000086_380--Hb_005291_030 Hb_027472_150 Hb_027472_150 Hb_000086_380--Hb_027472_150 Hb_021596_030 Hb_021596_030 Hb_000086_380--Hb_021596_030 Hb_002524_010 Hb_002524_010 Hb_000086_380--Hb_002524_010 Hb_001579_320 Hb_001579_320 Hb_000086_380--Hb_001579_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.85794 5.84783 3.6156 7.59138 5.18366 10.0282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6801 10.7987 3.23916 6.50122 4.37131

CAGE analysis