Hb_001842_120

Information

Type -
Description -
Location Contig1842: 160488-162236
Sequence    

Annotation

kegg
ID rcu:RCOM_2161170
description hypothetical protein
nr
ID XP_012075894.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID A0A067KQZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001842_120 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_183612_080 0.1408904811 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]
3 Hb_001504_320 0.1658073621 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
4 Hb_001425_110 0.1697955804 - - hypothetical protein Csa_6G106200 [Cucumis sativus]
5 Hb_001842_080 0.1801244387 - - -
6 Hb_000270_730 0.1817659474 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
7 Hb_000046_200 0.1829806177 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
8 Hb_001101_010 0.1886564308 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
9 Hb_001007_050 0.1905345287 - - hypothetical protein MIMGU_mgv1a0196712mg, partial [Erythranthe guttata]
10 Hb_032202_250 0.1964671976 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
11 Hb_004159_050 0.197134924 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000617_110 0.2020075598 - - translationally controlled tumor protein [Hevea brasiliensis]
13 Hb_000915_100 0.2096299848 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
14 Hb_000300_210 0.2107792194 - - gd2b, putative [Ricinus communis]
15 Hb_010172_100 0.2127573201 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
16 Hb_001140_240 0.2157601571 - - metal ion binding protein, putative [Ricinus communis]
17 Hb_002260_020 0.2174396615 - - -
18 Hb_004474_010 0.2185294857 - - unnamed protein product [Coffea canephora]
19 Hb_000345_430 0.219386205 - - 40S ribosomal protein S24A [Hevea brasiliensis]
20 Hb_000500_210 0.223018893 - - -

Gene co-expression network

sample Hb_001842_120 Hb_001842_120 Hb_183612_080 Hb_183612_080 Hb_001842_120--Hb_183612_080 Hb_001504_320 Hb_001504_320 Hb_001842_120--Hb_001504_320 Hb_001425_110 Hb_001425_110 Hb_001842_120--Hb_001425_110 Hb_001842_080 Hb_001842_080 Hb_001842_120--Hb_001842_080 Hb_000270_730 Hb_000270_730 Hb_001842_120--Hb_000270_730 Hb_000046_200 Hb_000046_200 Hb_001842_120--Hb_000046_200 Hb_000617_110 Hb_000617_110 Hb_183612_080--Hb_000617_110 Hb_183612_080--Hb_000270_730 Hb_183612_080--Hb_001842_080 Hb_004159_050 Hb_004159_050 Hb_183612_080--Hb_004159_050 Hb_000613_170 Hb_000613_170 Hb_183612_080--Hb_000613_170 Hb_001504_320--Hb_001425_110 Hb_001101_010 Hb_001101_010 Hb_001504_320--Hb_001101_010 Hb_008092_140 Hb_008092_140 Hb_001504_320--Hb_008092_140 Hb_003837_020 Hb_003837_020 Hb_001504_320--Hb_003837_020 Hb_003773_030 Hb_003773_030 Hb_001504_320--Hb_003773_030 Hb_000300_210 Hb_000300_210 Hb_001425_110--Hb_000300_210 Hb_000387_060 Hb_000387_060 Hb_001425_110--Hb_000387_060 Hb_000329_660 Hb_000329_660 Hb_001425_110--Hb_000329_660 Hb_000264_130 Hb_000264_130 Hb_001425_110--Hb_000264_130 Hb_001842_080--Hb_000270_730 Hb_001922_080 Hb_001922_080 Hb_001842_080--Hb_001922_080 Hb_032202_250 Hb_032202_250 Hb_001842_080--Hb_032202_250 Hb_000316_100 Hb_000316_100 Hb_001842_080--Hb_000316_100 Hb_010172_100 Hb_010172_100 Hb_001842_080--Hb_010172_100 Hb_000398_030 Hb_000398_030 Hb_000270_730--Hb_000398_030 Hb_000270_730--Hb_001922_080 Hb_000270_730--Hb_000316_100 Hb_027892_040 Hb_027892_040 Hb_000270_730--Hb_027892_040 Hb_011224_040 Hb_011224_040 Hb_000046_200--Hb_011224_040 Hb_000915_100 Hb_000915_100 Hb_000046_200--Hb_000915_100 Hb_000500_210 Hb_000500_210 Hb_000046_200--Hb_000500_210 Hb_000975_270 Hb_000975_270 Hb_000046_200--Hb_000975_270 Hb_000046_200--Hb_001425_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.486103 0.073289 0.0192915 0.979626 0.457336 2.34867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2114 25.5583 1.92642 0.300292 0.178341

CAGE analysis