Hb_001846_070

Information

Type -
Description -
Location Contig1846: 113095-117548
Sequence    

Annotation

kegg
ID pop:POPTR_0005s24170g
description POPTRDRAFT_205730; hypothetical protein
nr
ID XP_012092086.1
description PREDICTED: fructokinase-1 [Jatropha curcas]
swissprot
ID Q9M1B9
description Probable fructokinase-4 OS=Arabidopsis thaliana GN=At3g59480 PE=2 SV=1
trembl
ID A0A067JP89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21820 PE=4 SV=1
Gene Ontology
ID GO:0005634
description fructokinase-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18068: 117036-117557 , PASA_asmbl_18077: 113492-114629 , PASA_asmbl_18078: 112880-113101 , PASA_asmbl_18079: 111717-112440
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001846_070 0.0 - - PREDICTED: fructokinase-1 [Jatropha curcas]
2 Hb_003581_220 0.0935679991 - - unnamed protein product [Vitis vinifera]
3 Hb_000530_070 0.1007609864 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
4 Hb_000264_020 0.1081581609 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
5 Hb_002759_240 0.1110128884 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
6 Hb_146225_010 0.1227539537 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
7 Hb_002182_030 0.1303155031 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
8 Hb_003326_020 0.1313189956 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
9 Hb_000069_660 0.1337915663 - - PREDICTED: mitochondrial carrier protein MTM1 isoform X1 [Jatropha curcas]
10 Hb_001157_010 0.1350696633 - - deoxyhypusine synthase, putative [Ricinus communis]
11 Hb_003642_050 0.135695071 - - hypothetical protein CISIN_1g048193mg, partial [Citrus sinensis]
12 Hb_001894_170 0.1362981725 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
13 Hb_003579_030 0.1395021896 - - phosphatase 2C family protein [Populus trichocarpa]
14 Hb_000836_130 0.1408647087 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
15 Hb_032969_030 0.141348417 - - calmodulin binding protein, putative [Ricinus communis]
16 Hb_000802_100 0.1426118883 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
17 Hb_002876_120 0.1435835372 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
18 Hb_000373_180 0.1459067457 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
19 Hb_002105_030 0.1463919142 - - -
20 Hb_062135_020 0.1467410255 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_001846_070 Hb_001846_070 Hb_003581_220 Hb_003581_220 Hb_001846_070--Hb_003581_220 Hb_000530_070 Hb_000530_070 Hb_001846_070--Hb_000530_070 Hb_000264_020 Hb_000264_020 Hb_001846_070--Hb_000264_020 Hb_002759_240 Hb_002759_240 Hb_001846_070--Hb_002759_240 Hb_146225_010 Hb_146225_010 Hb_001846_070--Hb_146225_010 Hb_002182_030 Hb_002182_030 Hb_001846_070--Hb_002182_030 Hb_032969_030 Hb_032969_030 Hb_003581_220--Hb_032969_030 Hb_002603_150 Hb_002603_150 Hb_003581_220--Hb_002603_150 Hb_003581_220--Hb_000530_070 Hb_010402_050 Hb_010402_050 Hb_003581_220--Hb_010402_050 Hb_001076_020 Hb_001076_020 Hb_003581_220--Hb_001076_020 Hb_001314_040 Hb_001314_040 Hb_000530_070--Hb_001314_040 Hb_001157_010 Hb_001157_010 Hb_000530_070--Hb_001157_010 Hb_000802_100 Hb_000802_100 Hb_000530_070--Hb_000802_100 Hb_002026_120 Hb_002026_120 Hb_000530_070--Hb_002026_120 Hb_000530_070--Hb_001076_020 Hb_000373_180 Hb_000373_180 Hb_000264_020--Hb_000373_180 Hb_000264_020--Hb_146225_010 Hb_000260_310 Hb_000260_310 Hb_000264_020--Hb_000260_310 Hb_005841_050 Hb_005841_050 Hb_000264_020--Hb_005841_050 Hb_000264_020--Hb_002759_240 Hb_001894_170 Hb_001894_170 Hb_002759_240--Hb_001894_170 Hb_002759_240--Hb_146225_010 Hb_005841_040 Hb_005841_040 Hb_002759_240--Hb_005841_040 Hb_001052_030 Hb_001052_030 Hb_002759_240--Hb_001052_030 Hb_146225_010--Hb_001052_030 Hb_146225_010--Hb_005841_050 Hb_003326_020 Hb_003326_020 Hb_146225_010--Hb_003326_020 Hb_000123_160 Hb_000123_160 Hb_146225_010--Hb_000123_160 Hb_000239_030 Hb_000239_030 Hb_146225_010--Hb_000239_030 Hb_006472_050 Hb_006472_050 Hb_002182_030--Hb_006472_050 Hb_001135_210 Hb_001135_210 Hb_002182_030--Hb_001135_210 Hb_000975_300 Hb_000975_300 Hb_002182_030--Hb_000975_300 Hb_007594_120 Hb_007594_120 Hb_002182_030--Hb_007594_120 Hb_002876_120 Hb_002876_120 Hb_002182_030--Hb_002876_120 Hb_003581_260 Hb_003581_260 Hb_002182_030--Hb_003581_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4833 4.32539 5.89225 8.50274 4.64279 7.93191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.9556 71.7118 59.6543 7.58996 14.9323

CAGE analysis