Hb_001846_080

Information

Type -
Description -
Location Contig1846: 123181-129870
Sequence    

Annotation

kegg
ID tcc:TCM_026308
description RNA-binding KH domain-containing protein
nr
ID XP_009757351.1
description PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
swissprot
ID Q9SR13
description Flowering locus K homology domain OS=Arabidopsis thaliana GN=FLK PE=1 SV=1
trembl
ID A0A0B2P849
description Poly(RC)-binding protein 1 OS=Glycine soja GN=glysoja_011082 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18069: 123226-124741 , PASA_asmbl_18073: 101367-124461 , PASA_asmbl_18081: 124819-125767 , PASA_asmbl_18082: 125832-127676
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001846_080 0.0 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
2 Hb_000172_530 0.0729960728 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
3 Hb_000483_370 0.0817871229 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002172_030 0.0821666858 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
5 Hb_006478_070 0.0824393819 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
6 Hb_012654_020 0.0896029584 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000320_440 0.0927451501 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
8 Hb_012807_120 0.1011684678 - - metal ion binding protein, putative [Ricinus communis]
9 Hb_003777_220 0.1022622852 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
10 Hb_005410_010 0.1038769108 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
11 Hb_007111_040 0.105861354 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
12 Hb_113216_010 0.1086522372 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
13 Hb_098315_100 0.1090763659 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
14 Hb_006173_020 0.1116901893 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
15 Hb_154381_050 0.112277445 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000856_100 0.1128244824 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
17 Hb_001635_220 0.1130576855 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
18 Hb_000466_060 0.1132130088 - - phosphofructokinase [Hevea brasiliensis]
19 Hb_003226_170 0.1134014608 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
20 Hb_013479_020 0.1137603243 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]

Gene co-expression network

sample Hb_001846_080 Hb_001846_080 Hb_000172_530 Hb_000172_530 Hb_001846_080--Hb_000172_530 Hb_000483_370 Hb_000483_370 Hb_001846_080--Hb_000483_370 Hb_002172_030 Hb_002172_030 Hb_001846_080--Hb_002172_030 Hb_006478_070 Hb_006478_070 Hb_001846_080--Hb_006478_070 Hb_012654_020 Hb_012654_020 Hb_001846_080--Hb_012654_020 Hb_000320_440 Hb_000320_440 Hb_001846_080--Hb_000320_440 Hb_001523_010 Hb_001523_010 Hb_000172_530--Hb_001523_010 Hb_000172_530--Hb_000320_440 Hb_000172_530--Hb_006478_070 Hb_000466_060 Hb_000466_060 Hb_000172_530--Hb_000466_060 Hb_005016_030 Hb_005016_030 Hb_000172_530--Hb_005016_030 Hb_000603_200 Hb_000603_200 Hb_000483_370--Hb_000603_200 Hb_000483_370--Hb_002172_030 Hb_000483_370--Hb_000172_530 Hb_000483_370--Hb_006478_070 Hb_001635_220 Hb_001635_220 Hb_000483_370--Hb_001635_220 Hb_002172_030--Hb_012654_020 Hb_005410_010 Hb_005410_010 Hb_002172_030--Hb_005410_010 Hb_000050_120 Hb_000050_120 Hb_002172_030--Hb_000050_120 Hb_011609_190 Hb_011609_190 Hb_002172_030--Hb_011609_190 Hb_154381_050 Hb_154381_050 Hb_002172_030--Hb_154381_050 Hb_012807_120 Hb_012807_120 Hb_006478_070--Hb_012807_120 Hb_003506_040 Hb_003506_040 Hb_006478_070--Hb_003506_040 Hb_001140_080 Hb_001140_080 Hb_006478_070--Hb_001140_080 Hb_006478_070--Hb_000320_440 Hb_012654_020--Hb_005410_010 Hb_012654_020--Hb_011609_190 Hb_002078_040 Hb_002078_040 Hb_012654_020--Hb_002078_040 Hb_001776_080 Hb_001776_080 Hb_012654_020--Hb_001776_080 Hb_012654_020--Hb_000050_120 Hb_000320_440--Hb_001776_080 Hb_000088_180 Hb_000088_180 Hb_000320_440--Hb_000088_180 Hb_000260_700 Hb_000260_700 Hb_000320_440--Hb_000260_700 Hb_009615_110 Hb_009615_110 Hb_000320_440--Hb_009615_110 Hb_003777_220 Hb_003777_220 Hb_000320_440--Hb_003777_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.9673 8.82017 3.64394 3.87732 99.4602 115.578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.1343 25.031 27.0934 9.86604 1.81619

CAGE analysis