Hb_001847_060

Information

Type -
Description -
Location Contig1847: 48223-55240
Sequence    

Annotation

kegg
ID vvi:100853576
description probable LRR receptor-like serine/threonine-protein kinase At3g47570
nr
ID XP_010647269.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Vitis vinifera]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID F6HLX8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g04830 PE=4 SV=1
Gene Ontology
ID GO:0016772
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18087: 50121-51272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001847_060 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Vitis vinifera]
2 Hb_000042_110 0.0978292062 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
3 Hb_000260_490 0.1241680357 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
4 Hb_001663_130 0.1253613092 - - acyl-CoA thioesterase, putative [Ricinus communis]
5 Hb_000529_130 0.1290648434 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
6 Hb_001766_070 0.1331830977 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003177_070 0.1337049554 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
8 Hb_002259_220 0.1352119872 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
9 Hb_001160_110 0.1365081467 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
10 Hb_003687_130 0.137300137 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
11 Hb_000915_130 0.1373390534 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
12 Hb_007594_080 0.1373550326 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
13 Hb_002686_300 0.1393415236 - - adenosine diphosphatase, putative [Ricinus communis]
14 Hb_001279_020 0.1398649297 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
15 Hb_000787_080 0.1408080587 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
16 Hb_003687_080 0.1412161576 - - PREDICTED: casein kinase I-like [Jatropha curcas]
17 Hb_001396_020 0.1419483019 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
18 Hb_011930_100 0.1419524587 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
19 Hb_002249_020 0.1437437799 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
20 Hb_006846_170 0.144475974 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]

Gene co-expression network

sample Hb_001847_060 Hb_001847_060 Hb_000042_110 Hb_000042_110 Hb_001847_060--Hb_000042_110 Hb_000260_490 Hb_000260_490 Hb_001847_060--Hb_000260_490 Hb_001663_130 Hb_001663_130 Hb_001847_060--Hb_001663_130 Hb_000529_130 Hb_000529_130 Hb_001847_060--Hb_000529_130 Hb_001766_070 Hb_001766_070 Hb_001847_060--Hb_001766_070 Hb_003177_070 Hb_003177_070 Hb_001847_060--Hb_003177_070 Hb_000042_110--Hb_000260_490 Hb_000915_130 Hb_000915_130 Hb_000042_110--Hb_000915_130 Hb_011930_100 Hb_011930_100 Hb_000042_110--Hb_011930_100 Hb_000968_060 Hb_000968_060 Hb_000042_110--Hb_000968_060 Hb_001582_020 Hb_001582_020 Hb_000042_110--Hb_001582_020 Hb_003687_080 Hb_003687_080 Hb_000260_490--Hb_003687_080 Hb_007919_110 Hb_007919_110 Hb_000260_490--Hb_007919_110 Hb_074399_010 Hb_074399_010 Hb_000260_490--Hb_074399_010 Hb_002686_300 Hb_002686_300 Hb_000260_490--Hb_002686_300 Hb_005511_130 Hb_005511_130 Hb_000260_490--Hb_005511_130 Hb_000300_560 Hb_000300_560 Hb_001663_130--Hb_000300_560 Hb_003894_060 Hb_003894_060 Hb_001663_130--Hb_003894_060 Hb_001160_110 Hb_001160_110 Hb_001663_130--Hb_001160_110 Hb_007594_080 Hb_007594_080 Hb_001663_130--Hb_007594_080 Hb_002447_050 Hb_002447_050 Hb_001663_130--Hb_002447_050 Hb_011188_010 Hb_011188_010 Hb_001663_130--Hb_011188_010 Hb_004994_350 Hb_004994_350 Hb_000529_130--Hb_004994_350 Hb_000562_070 Hb_000562_070 Hb_000529_130--Hb_000562_070 Hb_029552_020 Hb_029552_020 Hb_000529_130--Hb_029552_020 Hb_001279_020 Hb_001279_020 Hb_000529_130--Hb_001279_020 Hb_001396_020 Hb_001396_020 Hb_000529_130--Hb_001396_020 Hb_003849_160 Hb_003849_160 Hb_000529_130--Hb_003849_160 Hb_000673_010 Hb_000673_010 Hb_001766_070--Hb_000673_010 Hb_000787_080 Hb_000787_080 Hb_001766_070--Hb_000787_080 Hb_000137_010 Hb_000137_010 Hb_001766_070--Hb_000137_010 Hb_000270_600 Hb_000270_600 Hb_001766_070--Hb_000270_600 Hb_001409_060 Hb_001409_060 Hb_001766_070--Hb_001409_060 Hb_008120_040 Hb_008120_040 Hb_001766_070--Hb_008120_040 Hb_000815_310 Hb_000815_310 Hb_003177_070--Hb_000815_310 Hb_001009_120 Hb_001009_120 Hb_003177_070--Hb_001009_120 Hb_033152_090 Hb_033152_090 Hb_003177_070--Hb_033152_090 Hb_000418_050 Hb_000418_050 Hb_003177_070--Hb_000418_050 Hb_000421_110 Hb_000421_110 Hb_003177_070--Hb_000421_110 Hb_003777_130 Hb_003777_130 Hb_003177_070--Hb_003777_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.629524 1.2004 2.06815 1.25264 0.449826 0.19308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.242427 0.088043 0.391218 0.373069 1.33966

CAGE analysis