Hb_001855_010

Information

Type -
Description -
Location Contig1855: 23565-33042
Sequence    

Annotation

kegg
ID rcu:RCOM_1586510
description cw7 protein, putative
nr
ID XP_012068181.1
description PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
swissprot
ID Q801S4
description Uncharacterized protein KIAA0930 homolog OS=Xenopus laevis PE=2 SV=2
trembl
ID A0A067LAQ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15997 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18141: 24163-32438 , PASA_asmbl_18143: 24163-31296 , PASA_asmbl_18144: 27001-27228
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001855_010 0.0 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
2 Hb_001135_160 0.0758985066 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
3 Hb_000023_140 0.0768133536 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
4 Hb_014568_030 0.0776356162 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
5 Hb_005063_040 0.082384266 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
6 Hb_005754_060 0.0860583679 - - conserved hypothetical protein [Ricinus communis]
7 Hb_071736_010 0.0880508646 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
8 Hb_010608_010 0.089557159 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
9 Hb_000077_050 0.0917709553 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_076787_010 0.0922690519 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
11 Hb_011794_060 0.0959695986 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000365_360 0.0960294459 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
13 Hb_002014_080 0.0961213882 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
14 Hb_000749_150 0.0961278995 - - -
15 Hb_001214_130 0.0964344449 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
16 Hb_011310_070 0.0964795332 - - ADP,ATP carrier protein, putative [Ricinus communis]
17 Hb_000172_370 0.0978632405 - - -
18 Hb_000003_090 0.0982716598 - - -
19 Hb_000120_500 0.0986049881 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
20 Hb_000671_100 0.1000283868 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]

Gene co-expression network

sample Hb_001855_010 Hb_001855_010 Hb_001135_160 Hb_001135_160 Hb_001855_010--Hb_001135_160 Hb_000023_140 Hb_000023_140 Hb_001855_010--Hb_000023_140 Hb_014568_030 Hb_014568_030 Hb_001855_010--Hb_014568_030 Hb_005063_040 Hb_005063_040 Hb_001855_010--Hb_005063_040 Hb_005754_060 Hb_005754_060 Hb_001855_010--Hb_005754_060 Hb_071736_010 Hb_071736_010 Hb_001855_010--Hb_071736_010 Hb_000172_370 Hb_000172_370 Hb_001135_160--Hb_000172_370 Hb_000556_080 Hb_000556_080 Hb_001135_160--Hb_000556_080 Hb_000365_360 Hb_000365_360 Hb_001135_160--Hb_000365_360 Hb_000017_120 Hb_000017_120 Hb_001135_160--Hb_000017_120 Hb_000012_090 Hb_000012_090 Hb_001135_160--Hb_000012_090 Hb_002616_050 Hb_002616_050 Hb_000023_140--Hb_002616_050 Hb_000023_140--Hb_005754_060 Hb_000023_140--Hb_071736_010 Hb_000023_140--Hb_005063_040 Hb_006788_070 Hb_006788_070 Hb_000023_140--Hb_006788_070 Hb_000077_050 Hb_000077_050 Hb_014568_030--Hb_000077_050 Hb_001584_110 Hb_001584_110 Hb_014568_030--Hb_001584_110 Hb_002014_080 Hb_002014_080 Hb_014568_030--Hb_002014_080 Hb_024714_030 Hb_024714_030 Hb_014568_030--Hb_024714_030 Hb_011282_030 Hb_011282_030 Hb_014568_030--Hb_011282_030 Hb_076787_010 Hb_076787_010 Hb_005063_040--Hb_076787_010 Hb_005063_040--Hb_002616_050 Hb_007101_100 Hb_007101_100 Hb_005063_040--Hb_007101_100 Hb_028872_140 Hb_028872_140 Hb_005063_040--Hb_028872_140 Hb_003005_020 Hb_003005_020 Hb_005063_040--Hb_003005_020 Hb_001030_120 Hb_001030_120 Hb_005063_040--Hb_001030_120 Hb_009048_040 Hb_009048_040 Hb_005754_060--Hb_009048_040 Hb_005754_060--Hb_071736_010 Hb_005883_050 Hb_005883_050 Hb_005754_060--Hb_005883_050 Hb_000395_170 Hb_000395_170 Hb_005754_060--Hb_000395_170 Hb_001454_210 Hb_001454_210 Hb_005754_060--Hb_001454_210 Hb_071736_010--Hb_005883_050 Hb_001266_080 Hb_001266_080 Hb_071736_010--Hb_001266_080 Hb_071736_010--Hb_002616_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.2544 2.88302 6.44738 5.83042 21.2476 33.89
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.382 13.4753 17.9593 6.18474 6.50506

CAGE analysis