Hb_001856_010

Information

Type -
Description -
Location Contig1856: 9814-11540
Sequence    

Annotation

kegg
ID rcu:RCOM_0492430
description DNA binding protein, putative
nr
ID XP_002529315.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8GWQ2
description AT-hook motif nuclear-localized protein 20 OS=Arabidopsis thaliana GN=AHL20 PE=2 SV=1
trembl
ID B9STJ6
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0492430 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding protein partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001856_010 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_002391_230 0.175338882 - - hypothetical protein RCOM_0745080 [Ricinus communis]
3 Hb_000009_620 0.1823764157 - - zinc finger protein, putative [Ricinus communis]
4 Hb_155123_010 0.1930801989 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
5 Hb_000134_350 0.2173840767 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8-like [Jatropha curcas]
6 Hb_004738_020 0.219921935 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001514_190 0.2260501361 - - -
8 Hb_001014_120 0.2261174115 transcription factor TF Family: ERF ethylene-responsive transcription factor ERF113 [Jatropha curcas]
9 Hb_001952_070 0.2265445714 - - 40S ribosomal protein S6B [Hevea brasiliensis]
10 Hb_008376_010 0.2266292097 - - -
11 Hb_000920_270 0.2270637553 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_24521 [Jatropha curcas]
12 Hb_000436_010 0.2315704451 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]
13 Hb_112399_010 0.2327982434 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_000640_300 0.2328594254 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
15 Hb_017987_090 0.2351467013 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
16 Hb_004116_200 0.2414337741 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
17 Hb_000123_110 0.2426930011 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like [Pyrus x bretschneideri]
18 Hb_000637_120 0.2433302388 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
19 Hb_000300_620 0.244504469 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
20 Hb_123051_020 0.2450231868 - - hypothetical protein POPTR_2151s00200g [Populus trichocarpa]

Gene co-expression network

sample Hb_001856_010 Hb_001856_010 Hb_002391_230 Hb_002391_230 Hb_001856_010--Hb_002391_230 Hb_000009_620 Hb_000009_620 Hb_001856_010--Hb_000009_620 Hb_155123_010 Hb_155123_010 Hb_001856_010--Hb_155123_010 Hb_000134_350 Hb_000134_350 Hb_001856_010--Hb_000134_350 Hb_004738_020 Hb_004738_020 Hb_001856_010--Hb_004738_020 Hb_001514_190 Hb_001514_190 Hb_001856_010--Hb_001514_190 Hb_011218_060 Hb_011218_060 Hb_002391_230--Hb_011218_060 Hb_001856_020 Hb_001856_020 Hb_002391_230--Hb_001856_020 Hb_000193_250 Hb_000193_250 Hb_002391_230--Hb_000193_250 Hb_000056_100 Hb_000056_100 Hb_002391_230--Hb_000056_100 Hb_002391_230--Hb_000134_350 Hb_007943_080 Hb_007943_080 Hb_002391_230--Hb_007943_080 Hb_028872_060 Hb_028872_060 Hb_000009_620--Hb_028872_060 Hb_000828_040 Hb_000828_040 Hb_000009_620--Hb_000828_040 Hb_002407_080 Hb_002407_080 Hb_000009_620--Hb_002407_080 Hb_004342_030 Hb_004342_030 Hb_000009_620--Hb_004342_030 Hb_114310_040 Hb_114310_040 Hb_000009_620--Hb_114310_040 Hb_008376_010 Hb_008376_010 Hb_155123_010--Hb_008376_010 Hb_018133_120 Hb_018133_120 Hb_155123_010--Hb_018133_120 Hb_155123_010--Hb_028872_060 Hb_155123_010--Hb_004738_020 Hb_004116_200 Hb_004116_200 Hb_155123_010--Hb_004116_200 Hb_000138_040 Hb_000138_040 Hb_000134_350--Hb_000138_040 Hb_000134_350--Hb_007943_080 Hb_000358_080 Hb_000358_080 Hb_000134_350--Hb_000358_080 Hb_003861_080 Hb_003861_080 Hb_000134_350--Hb_003861_080 Hb_009382_020 Hb_009382_020 Hb_000134_350--Hb_009382_020 Hb_000661_170 Hb_000661_170 Hb_000134_350--Hb_000661_170 Hb_001150_040 Hb_001150_040 Hb_004738_020--Hb_001150_040 Hb_004225_180 Hb_004225_180 Hb_004738_020--Hb_004225_180 Hb_000640_300 Hb_000640_300 Hb_004738_020--Hb_000640_300 Hb_000703_240 Hb_000703_240 Hb_004738_020--Hb_000703_240 Hb_001959_040 Hb_001959_040 Hb_004738_020--Hb_001959_040 Hb_000123_110 Hb_000123_110 Hb_001514_190--Hb_000123_110 Hb_001930_070 Hb_001930_070 Hb_001514_190--Hb_001930_070 Hb_006499_010 Hb_006499_010 Hb_001514_190--Hb_006499_010 Hb_031403_010 Hb_031403_010 Hb_001514_190--Hb_031403_010 Hb_007245_090 Hb_007245_090 Hb_001514_190--Hb_007245_090 Hb_000014_100 Hb_000014_100 Hb_001514_190--Hb_000014_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2677 5.37055 0 0.0370225 10.6798 9.92125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.47723 5.17219 18.4197 18.6015 0

CAGE analysis